Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   J0J33_RS10740 Genome accession   NZ_CP071295
Coordinates   608031..608447 (+) Length   138 a.a.
NCBI ID   WP_019293010.1    Uniprot ID   -
Organism   Lactococcus sp. LG1267     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 603031..613447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J33_RS03030 (J0J33_03030) guaB 603861..605342 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  J0J33_RS03035 (J0J33_03035) rpsU 605468..605644 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  J0J33_RS03040 (J0J33_03040) comGA 605830..606774 (+) 945 WP_173816876.1 competence type IV pilus ATPase ComGA Machinery gene
  J0J33_RS03045 (J0J33_03045) comGB/cglB 606713..607732 (+) 1020 WP_256440196.1 competence type IV pilus assembly protein ComGB Machinery gene
  J0J33_RS03050 (J0J33_03050) comYC 607751..608056 (+) 306 WP_040087209.1 competence type IV pilus major pilin ComGC Machinery gene
  J0J33_RS10740 comGD 608031..608447 (+) 417 WP_019293010.1 competence type IV pilus minor pilin ComGD Machinery gene
  J0J33_RS10870 (J0J33_03055) comGE 608479..608712 (+) 234 WP_019293009.1 competence type IV pilus minor pilin ComGE -
  J0J33_RS03060 (J0J33_03060) comGF 608699..609133 (+) 435 WP_242526938.1 competence type IV pilus minor pilin ComGF -
  J0J33_RS03065 (J0J33_03065) - 609365..610210 (+) 846 WP_019336001.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  J0J33_RS03070 (J0J33_03070) - 610281..611165 (-) 885 WP_086582775.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15758.38 Da        Isoelectric Point: 9.9391

>NTDB_id=544737 J0J33_RS10740 WP_019293010.1 608031..608447(+) (comGD) [Lactococcus sp. LG1267]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSQ
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=544737 J0J33_RS10740 WP_019293010.1 608031..608447(+) (comGD) [Lactococcus sp. LG1267]
ATGCAAAACGTAATGTACCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGTCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAGCGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAA
GAGGAAGTGCTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAACCATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

49.275

100

0.493
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

41.085

93.478

0.384
  comGD/cglD Streptococcus pneumoniae TIGR4

40.31

93.478

0.377
  comGD/cglD Streptococcus mitis NCTC 12261

39.231

94.203

0.37
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362