Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LD199_RS06830 Genome accession   NZ_CP084878
Coordinates   1413205..1413978 (-) Length   257 a.a.
NCBI ID   WP_031884019.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GS426     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408205..1418978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LD199_RS06795 (LD199_06795) - 1408453..1409223 (-) 771 WP_000473699.1 isoprenyl transferase -
  LD199_RS06800 (LD199_06800) frr 1409596..1410150 (-) 555 WP_001280006.1 ribosome recycling factor -
  LD199_RS06805 (LD199_06805) pyrH 1410169..1410891 (-) 723 WP_000057330.1 UMP kinase -
  LD199_RS06810 (LD199_06810) tsf 1411028..1411909 (-) 882 WP_000201392.1 translation elongation factor Ts -
  LD199_RS06815 (LD199_06815) - 1411944..1412057 (-) 114 WP_001789890.1 hypothetical protein -
  LD199_RS06820 (LD199_06820) rpsB 1412091..1412858 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  LD199_RS06825 (LD199_06825) - 1413057..1413131 (-) 75 WP_031761472.1 hypothetical protein -
  LD199_RS06830 (LD199_06830) codY 1413205..1413978 (-) 774 WP_031884019.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LD199_RS06835 (LD199_06835) hslU 1414003..1415406 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LD199_RS06840 (LD199_06840) hslV 1415472..1416017 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LD199_RS06845 (LD199_06845) xerC 1416014..1416910 (-) 897 WP_001015601.1 tyrosine recombinase XerC -
  LD199_RS06850 (LD199_06850) trmFO 1417328..1418635 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28783.18 Da        Isoelectric Point: 6.0680

>NTDB_id=535650 LD199_RS06830 WP_031884019.1 1413205..1413978(-) (codY) [Staphylococcus aureus strain GS426]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMVINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=535650 LD199_RS06830 WP_031884019.1 1413205..1413978(-) (codY) [Staphylococcus aureus strain GS426]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGTAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424