Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | I6J35_RS07055 | Genome accession | NZ_CP069567 |
| Coordinates | 1417606..1418037 (-) | Length | 143 a.a. |
| NCBI ID | WP_047130975.1 | Uniprot ID | A0AB37HBH2 |
| Organism | Staphylococcus condimenti strain FDAARGOS_1205 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1383316..1434146 | 1417606..1418037 | within | 0 |
Gene organization within MGE regions
Location: 1383316..1434146
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J35_RS06795 (I6J35_06795) | - | 1383316..1384779 (-) | 1464 | WP_063164608.1 | SH3 domain-containing protein | - |
| I6J35_RS06800 (I6J35_06800) | - | 1384776..1385252 (-) | 477 | WP_047133038.1 | phage holin | - |
| I6J35_RS06805 (I6J35_06805) | - | 1385300..1385698 (-) | 399 | WP_063164609.1 | hypothetical protein | - |
| I6J35_RS06810 (I6J35_06810) | - | 1385685..1386107 (-) | 423 | WP_047133029.1 | hypothetical protein | - |
| I6J35_RS06815 (I6J35_06815) | - | 1386145..1386297 (-) | 153 | WP_082107888.1 | XkdX family protein | - |
| I6J35_RS06820 (I6J35_06820) | - | 1386317..1386688 (-) | 372 | WP_047133028.1 | DUF2977 domain-containing protein | - |
| I6J35_RS06825 (I6J35_06825) | - | 1386688..1388166 (-) | 1479 | WP_052766786.1 | BppU family phage baseplate upper protein | - |
| I6J35_RS06830 (I6J35_06830) | - | 1388166..1390130 (-) | 1965 | WP_047133027.1 | right-handed parallel beta-helix repeat-containing protein | - |
| I6J35_RS06835 (I6J35_06835) | - | 1390127..1390357 (-) | 231 | WP_047133026.1 | hypothetical protein | - |
| I6J35_RS06840 (I6J35_06840) | - | 1390350..1391939 (-) | 1590 | WP_082107887.1 | prophage endopeptidase tail family protein | - |
| I6J35_RS06845 (I6J35_06845) | - | 1391949..1392803 (-) | 855 | WP_082107886.1 | distal tail protein Dit | - |
| I6J35_RS06850 (I6J35_06850) | - | 1392805..1396740 (-) | 3936 | WP_413783659.1 | phage tail tape measure protein | - |
| I6J35_RS06855 (I6J35_06855) | - | 1396918..1397847 (-) | 930 | WP_047133023.1 | hypothetical protein | - |
| I6J35_RS06860 (I6J35_06860) | - | 1397966..1398958 (-) | 993 | Protein_1324 | phage tail tape measure protein | - |
| I6J35_RS06865 (I6J35_06865) | gpGT | 1398987..1399139 (-) | 153 | WP_156483152.1 | phage tail assembly chaperone GT | - |
| I6J35_RS06870 (I6J35_06870) | gpG | 1399172..1399534 (-) | 363 | WP_047133021.1 | phage tail assembly chaperone G | - |
| I6J35_RS06875 (I6J35_06875) | - | 1399594..1399773 (-) | 180 | WP_047133020.1 | hypothetical protein | - |
| I6J35_RS06880 (I6J35_06880) | - | 1399793..1400416 (-) | 624 | WP_047133019.1 | major tail protein | - |
| I6J35_RS06885 (I6J35_06885) | - | 1400428..1400838 (-) | 411 | WP_047133034.1 | hypothetical protein | - |
| I6J35_RS06890 (I6J35_06890) | - | 1400844..1401233 (-) | 390 | WP_047133018.1 | hypothetical protein | - |
| I6J35_RS06895 (I6J35_06895) | - | 1401223..1401591 (-) | 369 | WP_047133017.1 | hypothetical protein | - |
| I6J35_RS06900 (I6J35_06900) | - | 1401575..1401862 (-) | 288 | WP_047133016.1 | hypothetical protein | - |
| I6J35_RS06905 (I6J35_06905) | - | 1401880..1403091 (-) | 1212 | WP_204107941.1 | phage major capsid protein | - |
| I6J35_RS06910 (I6J35_06910) | - | 1403103..1403810 (-) | 708 | WP_047133014.1 | head maturation protease, ClpP-related | - |
| I6J35_RS06915 (I6J35_06915) | - | 1403773..1404951 (-) | 1179 | WP_047133013.1 | phage portal protein | - |
| I6J35_RS06920 (I6J35_06920) | - | 1404967..1406637 (-) | 1671 | WP_047133012.1 | terminase TerL endonuclease subunit | - |
| I6J35_RS06925 (I6J35_06925) | - | 1406634..1406996 (-) | 363 | WP_082107885.1 | hypothetical protein | - |
| I6J35_RS06930 (I6J35_06930) | - | 1407183..1407518 (-) | 336 | WP_047133032.1 | HNH endonuclease | - |
| I6J35_RS06935 (I6J35_06935) | - | 1408202..1408648 (-) | 447 | WP_047133011.1 | transcriptional regulator | - |
| I6J35_RS06940 (I6J35_06940) | - | 1408697..1409167 (-) | 471 | WP_047133010.1 | Holliday junction resolvase RecU | - |
| I6J35_RS06945 (I6J35_06945) | - | 1409164..1409349 (-) | 186 | WP_232011926.1 | hypothetical protein | - |
| I6J35_RS06950 (I6J35_06950) | rinB | 1409346..1409519 (-) | 174 | WP_047133009.1 | transcriptional activator RinB | - |
| I6J35_RS06955 (I6J35_06955) | - | 1409516..1409749 (-) | 234 | WP_047133008.1 | DUF1381 domain-containing protein | - |
| I6J35_RS06960 (I6J35_06960) | - | 1409761..1409937 (-) | 177 | WP_156483153.1 | hypothetical protein | - |
| I6J35_RS06965 (I6J35_06965) | - | 1409952..1410158 (-) | 207 | WP_047133007.1 | helix-turn-helix transcriptional regulator | - |
| I6J35_RS06970 (I6J35_06970) | - | 1410203..1410502 (-) | 300 | WP_063164612.1 | MazG-like family protein | - |
| I6J35_RS06975 (I6J35_06975) | - | 1410495..1410716 (-) | 222 | WP_047132961.1 | hypothetical protein | - |
| I6J35_RS06980 (I6J35_06980) | - | 1410717..1410959 (-) | 243 | WP_047132962.1 | hypothetical protein | - |
| I6J35_RS06985 (I6J35_06985) | - | 1410956..1411150 (-) | 195 | WP_047132963.1 | hypothetical protein | - |
| I6J35_RS06990 (I6J35_06990) | - | 1411140..1411541 (-) | 402 | WP_063164613.1 | YopX family protein | - |
| I6J35_RS06995 (I6J35_06995) | - | 1411538..1411948 (-) | 411 | WP_047133049.1 | hypothetical protein | - |
| I6J35_RS07000 (I6J35_07000) | - | 1411935..1412138 (-) | 204 | WP_063164614.1 | hypothetical protein | - |
| I6J35_RS07005 (I6J35_07005) | - | 1412090..1412776 (-) | 687 | WP_174531717.1 | N-6 DNA methylase | - |
| I6J35_RS07010 (I6J35_07010) | - | 1412776..1413228 (-) | 453 | WP_047130966.1 | nucleoside 2-deoxyribosyltransferase | - |
| I6J35_RS07015 (I6J35_07015) | - | 1413221..1413718 (-) | 498 | WP_047130967.1 | DUF3310 domain-containing protein | - |
| I6J35_RS07020 (I6J35_07020) | - | 1413719..1414240 (-) | 522 | WP_047130968.1 | hypothetical protein | - |
| I6J35_RS07025 (I6J35_07025) | - | 1414243..1414431 (-) | 189 | WP_047130969.1 | hypothetical protein | - |
| I6J35_RS07030 (I6J35_07030) | - | 1414406..1414636 (-) | 231 | WP_047130970.1 | hypothetical protein | - |
| I6J35_RS07035 (I6J35_07035) | - | 1414633..1415868 (-) | 1236 | WP_408641260.1 | DnaB helicase C-terminal domain-containing protein | - |
| I6J35_RS07040 (I6J35_07040) | - | 1415858..1416214 (-) | 357 | WP_047130972.1 | hypothetical protein | - |
| I6J35_RS07045 (I6J35_07045) | - | 1416214..1416924 (-) | 711 | WP_204107942.1 | DnaD domain protein | - |
| I6J35_RS07050 (I6J35_07050) | - | 1416911..1417594 (-) | 684 | WP_047130974.1 | putative HNHc nuclease | - |
| I6J35_RS07055 (I6J35_07055) | ssbA | 1417606..1418037 (-) | 432 | WP_047130975.1 | single-stranded DNA-binding protein | Machinery gene |
| I6J35_RS07060 (I6J35_07060) | - | 1418037..1418717 (-) | 681 | WP_047130976.1 | ERF family protein | - |
| I6J35_RS07065 (I6J35_07065) | - | 1418718..1419203 (-) | 486 | WP_047130977.1 | siphovirus Gp157 family protein | - |
| I6J35_RS07070 (I6J35_07070) | - | 1419203..1419412 (-) | 210 | WP_047130978.1 | hypothetical protein | - |
| I6J35_RS07075 (I6J35_07075) | - | 1419495..1419659 (-) | 165 | WP_156483154.1 | hypothetical protein | - |
| I6J35_RS07080 (I6J35_07080) | - | 1419656..1419886 (-) | 231 | WP_047130979.1 | DUF771 domain-containing protein | - |
| I6J35_RS07085 (I6J35_07085) | - | 1419946..1420152 (+) | 207 | WP_046100574.1 | hypothetical protein | - |
| I6J35_RS13200 | - | 1420155..1420241 (-) | 87 | Protein_1370 | hypothetical protein | - |
| I6J35_RS07090 (I6J35_07090) | - | 1420559..1420759 (-) | 201 | WP_046100573.1 | hypothetical protein | - |
| I6J35_RS07095 (I6J35_07095) | - | 1420771..1421538 (-) | 768 | WP_047130981.1 | phage antirepressor KilAC domain-containing protein | - |
| I6J35_RS07100 (I6J35_07100) | - | 1421552..1421776 (-) | 225 | WP_047130982.1 | helix-turn-helix transcriptional regulator | - |
| I6J35_RS07105 (I6J35_07105) | - | 1421933..1422262 (+) | 330 | WP_047130983.1 | helix-turn-helix transcriptional regulator | - |
| I6J35_RS07110 (I6J35_07110) | - | 1422277..1422744 (+) | 468 | WP_047130984.1 | ImmA/IrrE family metallo-endopeptidase | - |
| I6J35_RS07115 (I6J35_07115) | - | 1422847..1423089 (+) | 243 | WP_047130985.1 | hypothetical protein | - |
| I6J35_RS07120 (I6J35_07120) | - | 1423353..1423499 (+) | 147 | WP_156483155.1 | hypothetical protein | - |
| I6J35_RS07125 (I6J35_07125) | - | 1423496..1424116 (-) | 621 | WP_063164615.1 | hypothetical protein | - |
| I6J35_RS07130 (I6J35_07130) | - | 1424248..1425276 (+) | 1029 | WP_047132460.1 | tyrosine-type recombinase/integrase | - |
| I6J35_RS07135 (I6J35_07135) | - | 1425952..1426893 (-) | 942 | WP_052766765.1 | HIRAN domain-containing protein | - |
| I6J35_RS07140 (I6J35_07140) | - | 1426972..1427442 (-) | 471 | WP_052766764.1 | hypothetical protein | - |
| I6J35_RS07145 (I6J35_07145) | - | 1428260..1428751 (-) | 492 | WP_052766763.1 | serine O-acetyltransferase | - |
| I6J35_RS07150 (I6J35_07150) | - | 1429052..1429549 (-) | 498 | WP_047132459.1 | fibrinogen-binding protein | - |
| I6J35_RS07155 (I6J35_07155) | - | 1429823..1430212 (-) | 390 | WP_047132458.1 | hypothetical protein | - |
| I6J35_RS07160 (I6J35_07160) | - | 1430585..1431079 (+) | 495 | WP_047132457.1 | hypothetical protein | - |
| I6J35_RS07165 (I6J35_07165) | - | 1431209..1431592 (+) | 384 | WP_047132456.1 | hypothetical protein | - |
| I6J35_RS07170 (I6J35_07170) | - | 1431689..1432135 (-) | 447 | WP_047132455.1 | GNAT family N-acetyltransferase | - |
| I6J35_RS07175 (I6J35_07175) | - | 1432306..1432758 (-) | 453 | WP_047132454.1 | VOC family protein | - |
| I6J35_RS07180 (I6J35_07180) | - | 1432867..1433244 (+) | 378 | WP_047132453.1 | VOC family protein | - |
| I6J35_RS07185 (I6J35_07185) | - | 1433402..1433581 (+) | 180 | WP_047132452.1 | hypothetical protein | - |
| I6J35_RS07190 (I6J35_07190) | - | 1433637..1434146 (-) | 510 | WP_047132451.1 | YfcE family phosphodiesterase | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 15963.72 Da Isoelectric Point: 6.3579
>NTDB_id=535650 I6J35_RS07055 WP_047130975.1 1417606..1418037(-) (ssbA) [Staphylococcus condimenti strain FDAARGOS_1205]
MINRTILVGRLTRDPEFRTTPSGVSVATFTLAVNRTFKNAQGEREADFINCVVFRKQAENVDKYVSKGSQVGVDGRLQSR
SYENKEGNRVYVTEVVCDNVQFLETKGTQKQNGQQPKQSLSSQENPFANANGPIDISDDDLPF
MINRTILVGRLTRDPEFRTTPSGVSVATFTLAVNRTFKNAQGEREADFINCVVFRKQAENVDKYVSKGSQVGVDGRLQSR
SYENKEGNRVYVTEVVCDNVQFLETKGTQKQNGQQPKQSLSSQENPFANANGPIDISDDDLPF
Nucleotide
Download Length: 432 bp
>NTDB_id=535650 I6J35_RS07055 WP_047130975.1 1417606..1418037(-) (ssbA) [Staphylococcus condimenti strain FDAARGOS_1205]
ATGATAAACAGAACAATTTTAGTAGGAAGATTAACACGTGATCCAGAATTTAGAACAACGCCAAGCGGAGTATCAGTAGC
AACATTCACTTTAGCAGTTAATCGTACATTCAAAAACGCACAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTTGTAT
TCCGTAAACAAGCGGAAAATGTTGACAAATATGTATCTAAAGGCAGTCAAGTAGGCGTAGATGGTCGCTTACAATCACGC
AGCTATGAAAATAAAGAAGGTAATCGCGTATACGTTACAGAAGTTGTATGTGACAACGTTCAATTCTTAGAAACAAAAGG
TACTCAAAAGCAGAATGGTCAACAACCTAAACAGTCATTAAGCAGTCAAGAAAATCCTTTTGCTAATGCTAATGGTCCTA
TTGATATTTCTGATGATGATCTTCCATTCTAG
ATGATAAACAGAACAATTTTAGTAGGAAGATTAACACGTGATCCAGAATTTAGAACAACGCCAAGCGGAGTATCAGTAGC
AACATTCACTTTAGCAGTTAATCGTACATTCAAAAACGCACAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTTGTAT
TCCGTAAACAAGCGGAAAATGTTGACAAATATGTATCTAAAGGCAGTCAAGTAGGCGTAGATGGTCGCTTACAATCACGC
AGCTATGAAAATAAAGAAGGTAATCGCGTATACGTTACAGAAGTTGTATGTGACAACGTTCAATTCTTAGAAACAAAAGG
TACTCAAAAGCAGAATGGTCAACAACCTAAACAGTCATTAAGCAGTCAAGAAAATCCTTTTGCTAATGCTAATGGTCCTA
TTGATATTTCTGATGATGATCTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.07 |
100 |
0.65 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.529 |
100 |
0.636 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.091 |
76.923 |
0.455 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.259 |
100 |
0.413 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
39.161 |
100 |
0.392 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
39.161 |
100 |
0.392 |
| ssbA | Streptococcus mutans UA159 |
39.161 |
100 |
0.392 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
38.462 |
100 |
0.385 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
38.462 |
100 |
0.385 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
38.462 |
100 |
0.385 |
| ssbB/cilA | Streptococcus mitis SK321 |
38.462 |
100 |
0.385 |
| ssb | Glaesserella parasuis strain SC1401 |
31.073 |
100 |
0.385 |
| ssb | Neisseria meningitidis MC58 |
31.395 |
100 |
0.378 |
| ssb | Neisseria gonorrhoeae MS11 |
31.395 |
100 |
0.378 |