NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	JH282_RS05345	Genome accession	NZ_CP066953
Coordinates	1265135..1265563 (+)	Length	142 a.a.
NCBI ID	WP_057671660.1	Uniprot ID	-
Organism	Xanthomonas campestris pv. campestris strain 10103
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1260135..1270563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JH282_RS05320 (JH282_05295)	-	1260234..1260374 (-)	141	WP_338000706.1	SymE family type I addiction module toxin	-
JH282_RS05325 (JH282_05300)	-	1260399..1261501 (+)	1103	WP_274376085.1	IS3 family transposase	-
JH282_RS05330 (JH282_05305)	coaE	1262024..1262647 (-)	624	WP_011038217.1	dephospho-CoA kinase	-
JH282_RS05335 (JH282_05310)	-	1262661..1263524 (-)	864	WP_057671659.1	A24 family peptidase	-
JH282_RS05340 (JH282_05315)	pilC	1263531..1264793 (-)	1263	WP_057671824.1	type II secretion system F family protein	Machinery gene
JH282_RS05345 (JH282_05320)	pilA	1265135..1265563 (+)	429	WP_057671660.1	pilin	Machinery gene
JH282_RS05350 (JH282_05325)	pilB	1265699..1267429 (+)	1731	WP_057671826.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JH282_RS05360 (JH282_05335)	pilR	1267848..1269242 (-)	1395	WP_057671663.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

Download Length: 142 a.a. Molecular weight: 14272.35 Da Isoelectric Point: 9.1206

                                >NTDB_id=523534 JH282_RS05345 WP_057671660.1 1265135..1265563(+) (pilA) [Xanthomonas campestris pv. campestris strain 10103]

MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALDSGWTAPTATNNVASVA

VATATGNITVTTTAKAGGGTIIFAPSANGAALASGTVPTDRISWDCKGGTLAAKYRPAECRT

Nucleotide

Download Length: 429 bp

                                >NTDB_id=523534 JH282_RS05345 WP_057671660.1 1265135..1265563(+) (pilA) [Xanthomonas campestris pv. campestris strain 10103]

ATGAAAAAGCAACAAGGCTTTACCCTGATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGCT

GCCGGCTTATCAGGACTACACCGTTCGCGGTCGTGTCTCTGAAGCAATGGTTGCTGCCTCTGCTGCCAAGACGGTTGTGG

CCGAGAATGCTGCGAACGGCTCCGCCCTAGACAGTGGTTGGACCGCTCCTACGGCAACTAACAATGTCGCCAGCGTCGCT

GTTGCTACCGCTACGGGCAATATCACTGTTACTACCACTGCCAAGGCCGGTGGCGGCACGATAATCTTTGCTCCCTCGGC

TAACGGTGCTGCACTGGCTTCCGGTACTGTTCCAACCGATCGTATTTCTTGGGATTGCAAGGGCGGCACCTTGGCTGCCA

AGTACCGTCCAGCTGAATGCCGCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Ralstonia pseudosolanacearum GMI1000	52.201	100	0.585
pilA2	Legionella pneumophila str. Paris	54.795	100	0.563
pilA2	Legionella pneumophila strain ERS1305867	54.795	100	0.563
comP	Acinetobacter baylyi ADP1	47.771	100	0.528
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	39.247	100	0.514
pilA/pilA1	Eikenella corrodens VA1	40	100	0.437
pilA/pilAI	Pseudomonas stutzeri DSM 10701	40.541	100	0.423
pilA/pilAII	Pseudomonas stutzeri DSM 10701	40.136	100	0.415
pilA	Acinetobacter baumannii strain A118	40.426	99.296	0.401
pilA	Vibrio cholerae C6706	33.766	100	0.366
pilA	Vibrio cholerae strain A1552	33.766	100	0.366
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	33.766	100	0.366

Detailed information NTG0523534