Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JGZ36_RS02810 Genome accession   NZ_CP066718
Coordinates   660746..661177 (+) Length   143 a.a.
NCBI ID   WP_110164873.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain DG064     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 655746..666177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ36_RS02740 (JGZ36_02740) - 655812..656141 (-) 330 WP_037543672.1 helix-turn-helix transcriptional regulator -
  JGZ36_RS02745 (JGZ36_02745) - 656336..656572 (+) 237 WP_037543670.1 helix-turn-helix transcriptional regulator -
  JGZ36_RS02750 (JGZ36_02750) - 656583..656744 (+) 162 WP_037543668.1 hypothetical protein -
  JGZ36_RS02755 (JGZ36_02755) - 656748..657011 (-) 264 WP_037543667.1 CRISPR-associated endonuclease Cas2 -
  JGZ36_RS02760 (JGZ36_02760) - 657068..657262 (+) 195 WP_015728796.1 hypothetical protein -
  JGZ36_RS02765 (JGZ36_02765) - 657368..657535 (+) 168 WP_015728797.1 hypothetical protein -
  JGZ36_RS02770 (JGZ36_02770) - 657532..657759 (-) 228 WP_037543665.1 hypothetical protein -
  JGZ36_RS02775 (JGZ36_02775) - 657837..658556 (+) 720 WP_199274093.1 BRO family protein -
  JGZ36_RS02780 (JGZ36_02780) - 658553..658777 (+) 225 WP_015728800.1 hypothetical protein -
  JGZ36_RS02785 (JGZ36_02785) - 658765..658953 (+) 189 WP_065354752.1 hypothetical protein -
  JGZ36_RS02790 (JGZ36_02790) - 659023..659298 (+) 276 WP_199274094.1 DUF1108 family protein -
  JGZ36_RS02795 (JGZ36_02795) - 659310..659564 (+) 255 WP_065354602.1 hypothetical protein -
  JGZ36_RS02800 (JGZ36_02800) - 659557..660105 (+) 549 WP_065354601.1 host-nuclease inhibitor Gam family protein -
  JGZ36_RS02805 (JGZ36_02805) - 660109..660753 (+) 645 WP_100004523.1 ERF family protein -
  JGZ36_RS02810 (JGZ36_02810) ssbA 660746..661177 (+) 432 WP_110164873.1 single-stranded DNA-binding protein Machinery gene
  JGZ36_RS02815 (JGZ36_02815) - 661158..661352 (+) 195 WP_015728806.1 hypothetical protein -
  JGZ36_RS02820 (JGZ36_02820) - 661361..662032 (+) 672 WP_110164874.1 putative HNHc nuclease -
  JGZ36_RS02825 (JGZ36_02825) - 662025..662738 (+) 714 WP_100002827.1 helix-turn-helix domain-containing protein -
  JGZ36_RS02830 (JGZ36_02830) - 662748..663521 (+) 774 WP_100002825.1 ATP-binding protein -
  JGZ36_RS02835 (JGZ36_02835) - 663515..663694 (+) 180 WP_099997373.1 hypothetical protein -
  JGZ36_RS02840 (JGZ36_02840) - 663695..664126 (+) 432 WP_082704422.1 RusA family crossover junction endodeoxyribonuclease -
  JGZ36_RS02845 (JGZ36_02845) - 664119..664337 (+) 219 WP_075773716.1 hypothetical protein -
  JGZ36_RS02850 (JGZ36_02850) - 664350..664670 (+) 321 WP_081378304.1 hypothetical protein -
  JGZ36_RS02855 (JGZ36_02855) - 664827..665279 (+) 453 WP_075773718.1 DUF3310 domain-containing protein -
  JGZ36_RS14370 - 665303..665485 (+) 183 WP_075773719.1 hypothetical protein -
  JGZ36_RS02860 (JGZ36_02860) - 665482..665733 (+) 252 WP_065354745.1 hypothetical protein -
  JGZ36_RS02865 (JGZ36_02865) - 665733..665981 (+) 249 WP_199274095.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16156.80 Da        Isoelectric Point: 5.2164

>NTDB_id=522060 JGZ36_RS02810 WP_110164873.1 660746..661177(+) (ssbA) [Staphylococcus pseudintermedius strain DG064]
MLNRVVLVGRLTKDPEFRTTPSGVSVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLSKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDSVQFLESKNNNQSNNQQQRGQAPAQDNPFTNSNNPIDIDDEDLPF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=522060 JGZ36_RS02810 WP_110164873.1 660746..661177(+) (ssbA) [Staphylococcus pseudintermedius strain DG064]
ATGCTTAATAGAGTTGTATTAGTGGGTCGATTAACAAAAGACCCCGAATTCAGAACGACACCCTCAGGCGTAAGTGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAACGTGAACAACTATCTAAGCAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTGATTTGTGATAGCGTGCAATTTTTAGAGTCTAAAAA
TAACAATCAATCAAACAACCAACAACAAAGAGGTCAAGCGCCTGCACAAGATAATCCATTCACTAACTCAAATAATCCGA
TTGACATCGACGATGAAGATTTACCCTTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.395

100

0.678
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

74.126

0.42
  ssbA Streptococcus mutans UA159

41.259

100

0.413
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.86

100

0.399
  ssbB/cilA Streptococcus mitis NCTC 12261

39.161

100

0.392
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.161

100

0.392
  ssbB/cilA Streptococcus pneumoniae Rx1

38.462

100

0.385
  ssbB/cilA Streptococcus pneumoniae D39

38.462

100

0.385
  ssbB/cilA Streptococcus pneumoniae R6

38.462

100

0.385
  ssbB/cilA Streptococcus mitis SK321

38.462

100

0.385
  ssb Neisseria gonorrhoeae MS11

31.214

100

0.378
  ssb Neisseria meningitidis MC58

31.214

100

0.378
  ssb Glaesserella parasuis strain SC1401

29.944

100

0.371