Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   I6I02_RS09535 Genome accession   NZ_CP066093
Coordinates   2082715..2083212 (-) Length   165 a.a.
NCBI ID   WP_175057370.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2077715..2088212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS09515 (I6I02_09515) - 2077744..2079348 (-) 1605 WP_049545134.1 CTP synthase -
  I6I02_RS09520 (I6I02_09520) rpoE 2079601..2080176 (-) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  I6I02_RS09525 (I6I02_09525) tig 2080334..2081617 (-) 1284 WP_002889721.1 trigger factor -
  I6I02_RS09530 (I6I02_09530) - 2081760..2082602 (+) 843 WP_175057371.1 mechanosensitive ion channel family protein -
  I6I02_RS09535 (I6I02_09535) comX/sigX 2082715..2083212 (-) 498 WP_175057370.1 sigma-70 family RNA polymerase sigma factor Regulator
  I6I02_RS09540 (I6I02_09540) tnpA 2083764..2083931 (-) 168 Protein_1887 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19979.80 Da        Isoelectric Point: 5.1688

>NTDB_id=517388 I6I02_RS09535 WP_175057370.1 2082715..2083212(-) (comX/sigX) [Streptococcus salivarius strain FDAARGOS_1045]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLKKFPELASDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=517388 I6I02_RS09535 WP_175057370.1 2082715..2083212(-) (comX/sigX) [Streptococcus salivarius strain FDAARGOS_1045]
ATGGAACAAGAAGTTTTTGTTCACGCATATGAAGTTGTAAGGCCGATTGTACTTAAGGCTAGTAGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAGGAAGCAATGATGACACTTTATCAGCTTTTAAAAAAGTTTCCTGAGTTAGCGT
CTGATGATGATAAGCTTCGACGTTATTTCAAAACTAAGTTTAGGAATAGGTTGAATGATGAGGTTAGAAGACAGGAGTCT
GTAAAACGACAAGCTAATAGACAATGTTATATCGAAATTTCAGATATTGCTTTTTGTCTTCCGAATAAAGAGTTAGATGC
GGTAGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTCTGCTAGCTGGAGAATGTTTTAGAGGTCGAAAAAAGATGATCAGGGAGTTAAAATTTTGGATGGTAGATTTTGATCCT
TATAATGAAGAAGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.