Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   I6H76_RS04270 Genome accession   NZ_CP065994
Coordinates   847719..848195 (-) Length   158 a.a.
NCBI ID   WP_115283725.1    Uniprot ID   -
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 842719..853195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS04245 (I6H76_04245) - 843630..844220 (-) 591 WP_006531010.1 glycoside hydrolase family 73 protein -
  I6H76_RS04250 (I6H76_04250) - 844217..844993 (-) 777 WP_006531011.1 M15 family metallopeptidase -
  I6H76_RS04255 (I6H76_04255) - 844977..845681 (-) 705 WP_006531012.1 histidine phosphatase family protein -
  I6H76_RS04260 (I6H76_04260) - 845911..847248 (-) 1338 WP_006531013.1 PFL family protein -
  I6H76_RS04265 (I6H76_04265) - 847260..847526 (-) 267 WP_006531014.1 ACT domain-containing protein -
  I6H76_RS04270 (I6H76_04270) comX/sigX 847719..848195 (-) 477 WP_115283725.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19486.39 Da        Isoelectric Point: 8.2477

>NTDB_id=516125 I6H76_RS04270 WP_115283725.1 847719..848195(-) (comX/sigX) [Streptococcus infantarius strain FDAARGOS_1019]
MDFERYFQTVKPIILKLRRHYFVKLWDYEDWIQEGRIVFFQLLEEHPDLLNNEGKCYSYFKTKFSNHVKDIIRHQESFKR
KFNRMPYEEISDISHCVPQVFFFEVEDYVAYQDSLACLRRTLGREDRLKLEKVIRGERFEGKKAFLKSIELYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=516125 I6H76_RS04270 WP_115283725.1 847719..848195(-) (comX/sigX) [Streptococcus infantarius strain FDAARGOS_1019]
GTGGATTTTGAACGCTATTTTCAAACGGTTAAACCAATTATTTTAAAATTACGCCGTCATTATTTTGTCAAACTTTGGGA
TTATGAAGATTGGATTCAAGAAGGTCGAATTGTTTTCTTTCAACTCTTAGAGGAGCATCCAGACCTCTTAAATAATGAAG
GCAAATGCTATAGCTACTTTAAAACAAAATTTTCTAACCATGTTAAAGATATTATCCGCCATCAGGAATCCTTTAAACGG
AAATTTAATCGCATGCCTTATGAAGAAATTAGTGATATTAGTCACTGTGTGCCCCAGGTATTTTTCTTTGAAGTCGAAGA
TTACGTGGCTTATCAGGATAGCTTAGCTTGTTTACGAAGAACATTGGGAAGAGAAGACCGACTAAAGTTGGAAAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGCCTTTTTAAAAAGCATTGAACTGTATTTCTCAGATTTTAGACCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.