Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   I6H76_RS03990 Genome accession   NZ_CP065994
Coordinates   790558..791034 (-) Length   158 a.a.
NCBI ID   WP_115283731.1    Uniprot ID   -
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 785558..796034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS03960 (I6H76_03960) - 785635..785859 (-) 225 WP_006531079.1 acyl carrier protein -
  I6H76_RS03965 (I6H76_03965) - 785920..786894 (-) 975 WP_006531078.1 beta-ketoacyl-ACP synthase III -
  I6H76_RS03970 (I6H76_03970) - 786897..787331 (-) 435 WP_014334322.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6H76_RS03975 (I6H76_03975) - 787447..788235 (-) 789 WP_006531076.1 enoyl-CoA hydratase -
  I6H76_RS03980 (I6H76_03980) - 788426..789073 (-) 648 WP_006531075.1 HAD family phosphatase -
  I6H76_RS03985 (I6H76_03985) - 789170..790528 (+) 1359 WP_006531074.1 aspartate kinase -
  I6H76_RS03990 (I6H76_03990) comX/sigX 790558..791034 (-) 477 WP_115283731.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19405.26 Da        Isoelectric Point: 9.2015

>NTDB_id=516121 I6H76_RS03990 WP_115283731.1 790558..791034(-) (comX/sigX) [Streptococcus infantarius strain FDAARGOS_1019]
MDFERYFQTVKPIILKLRRHYFVKLWDYEDWIQEGRIVFFQLLEEHPDLLNNEGKRYSYFKTKFSNHVKDIIRHQESFKR
KFNRMPYEEISDISHCVPQVSFFEVADYVAYQDSLACLRRTLGREDRLKLEKVIRGERFEGKKAFLKSIEPYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=516121 I6H76_RS03990 WP_115283731.1 790558..791034(-) (comX/sigX) [Streptococcus infantarius strain FDAARGOS_1019]
GTGGATTTTGAACGCTATTTTCAAACGGTTAAACCAATTATTTTAAAATTACGCCGTCATTATTTTGTCAAACTTTGGGA
TTATGAAGATTGGATTCAAGAAGGTCGAATTGTTTTCTTTCAACTCTTAGAGGAGCATCCTGACCTCTTAAATAATGAAG
GCAAACGCTATAGCTACTTTAAAACAAAATTTTCTAACCATGTTAAAGATATTATCCGCCATCAGGAATCCTTTAAACGG
AAATTTAATCGCATGCCTTATGAAGAAATTAGTGATATTAGTCACTGTGTGCCCCAGGTATCTTTCTTTGAAGTCGCAGA
TTACGTGGCTTATCAGGATAGCTTAGCTTGTTTACGAAGAACATTGGGAAGAGAAGACCGACTAAAGTTGGAAAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGCCTTTTTAAAAAGCATTGAACCGTATTTCTCAGATTTTAGACCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.