Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   STAVA116_RS00785 Genome accession   NZ_CP065498
Coordinates   136006..136503 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   A0A0M4HKA9
Organism   Streptococcus thermophilus strain AVA116     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 131571..135252 136006..136503 flank 754


Gene organization within MGE regions


Location: 131571..136503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS00750 (STAVA116_00745) - 131574..131909 (-) 336 Protein_106 transposase -
  STAVA116_RS00755 (STAVA116_00750) - 132112..132333 (+) 222 WP_002948904.1 DUF4649 family protein -
  STAVA116_RS00760 (STAVA116_00755) - 132418..132740 (-) 323 Protein_108 transposase -
  STAVA116_RS00765 (STAVA116_00760) - 132929..133255 (+) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  STAVA116_RS00770 (STAVA116_00765) - 133337..134527 (+) 1191 WP_087009628.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  STAVA116_RS00775 (STAVA116_00770) - 134788..135252 (-) 465 Protein_111 transposase family protein -
  STAVA116_RS00780 (STAVA116_00775) - 135610..135699 (+) 90 Protein_112 IS200/IS605 family transposase -
  STAVA116_RS00785 (STAVA116_00780) comX 136006..136503 (+) 498 WP_002949220.1 sigma factor Regulator

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=511113 STAVA116_RS00785 WP_002949220.1 136006..136503(+) (comX) [Streptococcus thermophilus strain AVA116]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=511113 STAVA116_RS00785 WP_002949220.1 136006..136503(+) (comX) [Streptococcus thermophilus strain AVA116]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4HKA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.