Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   SMULJ23_RS01075 Genome accession   NC_017768
Coordinates   251074..251388 (+) Length   104 a.a.
NCBI ID   WP_002263437.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 246074..256388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS01060 (SMULJ23_0192) - 248653..249036 (+) 384 WP_002263434.1 DUF1033 family protein -
  SMULJ23_RS01065 (SMULJ23_0193) comYA 249166..250107 (+) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  SMULJ23_RS01070 (SMULJ23_0194) comYB 250043..251074 (+) 1032 WP_255264922.1 competence type IV pilus assembly protein ComGB Machinery gene
  SMULJ23_RS01075 (SMULJ23_0195) comYC 251074..251388 (+) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  SMULJ23_RS01080 (SMULJ23_0196) comYD 251375..251779 (+) 405 WP_002263438.1 competence type IV pilus minor pilin ComGD Machinery gene
  SMULJ23_RS01085 (SMULJ23_0197) comYE 251751..252044 (+) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  SMULJ23_RS01090 (SMULJ23_0198) comYF 252031..252465 (+) 435 WP_002274770.1 competence type IV pilus minor pilin ComGF Machinery gene
  SMULJ23_RS01095 (SMULJ23_0199) comYG 252443..252832 (+) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  SMULJ23_RS01100 (SMULJ23_0200) comYH 252887..253840 (+) 954 WP_002264244.1 class I SAM-dependent methyltransferase Machinery gene
  SMULJ23_RS01105 (SMULJ23_0201) - 253899..255098 (+) 1200 WP_002263443.1 acetate kinase -
  SMULJ23_RS01110 tnpA 255311..255774 (+) 464 Protein_198 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11591.60 Da        Isoelectric Point: 10.2206

>NTDB_id=50731 SMULJ23_RS01075 WP_002263437.1 251074..251388(+) (comYC) [Streptococcus mutans LJ23]
MKKIKRVSVRAFTLIEMLVVLLIISILLLLFVPNLTKQKDKVKDTGGSAVVKVVESQAELYELNKTDSATLSKLVASGDI
TQEQANSYKDYYAKHPSKTRHVAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=50731 SMULJ23_RS01075 WP_002263437.1 251074..251388(+) (comYC) [Streptococcus mutans LJ23]
ATGAAAAAGATCAAGAGAGTCAGTGTACGGGCTTTTACGCTTATAGAAATGTTAGTAGTTCTTCTCATTATTAGTATTCT
TTTACTATTATTTGTTCCTAATTTAACTAAGCAAAAAGATAAGGTAAAAGATACTGGCGGTTCTGCCGTGGTTAAAGTTG
TAGAAAGTCAGGCTGAGCTTTATGAGCTTAATAAAACCGATTCTGCTACTCTTTCTAAATTAGTAGCTAGTGGTGATATT
ACACAAGAACAGGCAAATTCATACAAGGATTACTATGCAAAACACCCAAGTAAAACACGGCATGTCGCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

100

100

1
  comYC Streptococcus mutans UA159

100

100

1
  comYC Streptococcus gordonii str. Challis substr. CH1

71.429

100

0.721
  comGC/cglC Streptococcus mitis SK321

66.667

95.192

0.635
  comGC/cglC Streptococcus mitis NCTC 12261

69.565

88.462

0.615
  comGC/cglC Streptococcus pneumoniae R6

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae Rx1

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae D39

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae TIGR4

63.636

95.192

0.606
  comGC Lactococcus lactis subsp. cremoris KW2

55.446

97.115

0.538
  comYC Streptococcus suis isolate S10

60.227

84.615

0.51

Multiple sequence alignment