Detailed information NTG0050732

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: SMULJ23_RS01080
• Genome accession: NC_017768
• Coordinates: 251375..251779 (+)
• Length: 134 a.a.
• NCBI ID: WP_002263438.1
• Uniprot ID: -
• Organism: Streptococcus mutans LJ23
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 246375..256779

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMULJ23_RS01060 (SMULJ23_0192)	-	248653..249036 (+)	384	WP_002263434.1	DUF1033 family protein	-
SMULJ23_RS01065 (SMULJ23_0193)	comYA	249166..250107 (+)	942	WP_002263435.1	competence type IV pilus ATPase ComGA	Machinery gene
SMULJ23_RS01070 (SMULJ23_0194)	comYB	250043..251074 (+)	1032	WP_255264922.1	competence type IV pilus assembly protein ComGB	Machinery gene
SMULJ23_RS01075 (SMULJ23_0195)	comYC	251074..251388 (+)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
SMULJ23_RS01080 (SMULJ23_0196)	comYD	251375..251779 (+)	405	WP_002263438.1	competence type IV pilus minor pilin ComGD	Machinery gene
SMULJ23_RS01085 (SMULJ23_0197)	comYE	251751..252044 (+)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
SMULJ23_RS01090 (SMULJ23_0198)	comYF	252031..252465 (+)	435	WP_002274770.1	competence type IV pilus minor pilin ComGF	Machinery gene
SMULJ23_RS01095 (SMULJ23_0199)	comYG	252443..252832 (+)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
SMULJ23_RS01100 (SMULJ23_0200)	comYH	252887..253840 (+)	954	WP_002264244.1	class I SAM-dependent methyltransferase	Machinery gene
SMULJ23_RS01105 (SMULJ23_0201)	-	253899..255098 (+)	1200	WP_002263443.1	acetate kinase	-
SMULJ23_RS01110	tnpA	255311..255774 (+)	464	Protein_198	IS200/IS605 family transposase	-
SMULJ23_RS01115 (SMULJ23_0204)	-	256407..256652 (+)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15444.77 Da
• Isoelectric Point: 9.5619

>NTDB_id=50732 SMULJ23_RS01080 WP_002263438.1 251375..251779(+) (comYD) [Streptococcus mutans LJ23]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEERLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=50732 SMULJ23_RS01080 WP_002263438.1 251375..251779(+) (comYD) [Streptococcus mutans LJ23]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCGTCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	100	100	1
comYD	Streptococcus mutans UA159	100	100	1
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388