Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   SMULJ23_RS01085 Genome accession   NC_017768
Coordinates   251751..252044 (+) Length   97 a.a.
NCBI ID   WP_002263439.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 246751..257044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS01060 (SMULJ23_0192) - 248653..249036 (+) 384 WP_002263434.1 DUF1033 family protein -
  SMULJ23_RS01065 (SMULJ23_0193) comYA 249166..250107 (+) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  SMULJ23_RS01070 (SMULJ23_0194) comYB 250043..251074 (+) 1032 WP_255264922.1 competence type IV pilus assembly protein ComGB Machinery gene
  SMULJ23_RS01075 (SMULJ23_0195) comYC 251074..251388 (+) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  SMULJ23_RS01080 (SMULJ23_0196) comYD 251375..251779 (+) 405 WP_002263438.1 competence type IV pilus minor pilin ComGD Machinery gene
  SMULJ23_RS01085 (SMULJ23_0197) comYE 251751..252044 (+) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  SMULJ23_RS01090 (SMULJ23_0198) comYF 252031..252465 (+) 435 WP_002274770.1 competence type IV pilus minor pilin ComGF Machinery gene
  SMULJ23_RS01095 (SMULJ23_0199) comYG 252443..252832 (+) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  SMULJ23_RS01100 (SMULJ23_0200) comYH 252887..253840 (+) 954 WP_002264244.1 class I SAM-dependent methyltransferase Machinery gene
  SMULJ23_RS01105 (SMULJ23_0201) - 253899..255098 (+) 1200 WP_002263443.1 acetate kinase -
  SMULJ23_RS01110 tnpA 255311..255774 (+) 464 Protein_198 IS200/IS605 family transposase -
  SMULJ23_RS01115 (SMULJ23_0204) - 256407..256652 (+) 246 WP_002263444.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11001.91 Da        Isoelectric Point: 9.4908

>NTDB_id=50733 SMULJ23_RS01085 WP_002263439.1 251751..252044(+) (comYE) [Streptococcus mutans LJ23]
MVSIKKQKVKAYILLESLVALGLFVTITTLILTQLSHYQERTAKNLQKQEILNLAIMALQTQQDHLSFNGVSVTVVKNQG
ETIVYHDHEEVINLVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=50733 SMULJ23_RS01085 WP_002263439.1 251751..252044(+) (comYE) [Streptococcus mutans LJ23]
GTGGTCAGTATAAAAAAACAGAAAGTTAAAGCTTATATTCTTCTAGAAAGTTTAGTTGCTTTGGGGCTTTTCGTAACCAT
CACAACTTTAATTCTTACTCAGTTGAGTCATTATCAGGAAAGAACAGCTAAAAATTTACAAAAACAAGAAATATTGAATT
TAGCAATAATGGCTCTTCAAACTCAGCAAGATCATTTAAGCTTCAACGGCGTCAGTGTTACGGTTGTTAAAAATCAAGGG
GAAACTATAGTTTATCATGATCATGAGGAGGTTATCAATCTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

100

100

1
  comYE Streptococcus mutans UA159

100

100

1
  comGE/cglE Streptococcus pneumoniae Rx1

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae D39

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae R6

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae TIGR4

44.444

92.784

0.412
  comGE/cglE Streptococcus mitis NCTC 12261

44.444

92.784

0.412
  comGE/cglE Streptococcus mitis SK321

44.444

92.784

0.412

Multiple sequence alignment