Detailed information NTG0050734

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: SMULJ23_RS01090
• Genome accession: NC_017768
• Coordinates: 252031..252465 (+)
• Length: 144 a.a.
• NCBI ID: WP_002274770.1
• Uniprot ID: -
• Organism: Streptococcus mutans LJ23
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 247031..257465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMULJ23_RS01060 (SMULJ23_0192)	-	248653..249036 (+)	384	WP_002263434.1	DUF1033 family protein	-
SMULJ23_RS01065 (SMULJ23_0193)	comYA	249166..250107 (+)	942	WP_002263435.1	competence type IV pilus ATPase ComGA	Machinery gene
SMULJ23_RS01070 (SMULJ23_0194)	comYB	250043..251074 (+)	1032	WP_255264922.1	competence type IV pilus assembly protein ComGB	Machinery gene
SMULJ23_RS01075 (SMULJ23_0195)	comYC	251074..251388 (+)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
SMULJ23_RS01080 (SMULJ23_0196)	comYD	251375..251779 (+)	405	WP_002263438.1	competence type IV pilus minor pilin ComGD	Machinery gene
SMULJ23_RS01085 (SMULJ23_0197)	comYE	251751..252044 (+)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
SMULJ23_RS01090 (SMULJ23_0198)	comYF	252031..252465 (+)	435	WP_002274770.1	competence type IV pilus minor pilin ComGF	Machinery gene
SMULJ23_RS01095 (SMULJ23_0199)	comYG	252443..252832 (+)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
SMULJ23_RS01100 (SMULJ23_0200)	comYH	252887..253840 (+)	954	WP_002264244.1	class I SAM-dependent methyltransferase	Machinery gene
SMULJ23_RS01105 (SMULJ23_0201)	-	253899..255098 (+)	1200	WP_002263443.1	acetate kinase	-
SMULJ23_RS01110	tnpA	255311..255774 (+)	464	Protein_198	IS200/IS605 family transposase	-
SMULJ23_RS01115 (SMULJ23_0204)	-	256407..256652 (+)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-
SMULJ23_RS01120 (SMULJ23_0205)	-	256621..257061 (+)	441	WP_002264006.1	hypothetical protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16251.78 Da
• Isoelectric Point: 10.1806

>NTDB_id=50734 SMULJ23_RS01090 WP_002274770.1 252031..252465(+) (comYF) [Streptococcus mutans LJ23]
MLKSKLKAFTLLECLLALLVIAGSVSVYNGLTKAISSNIHYLSKNQEDAWLLFCQQFRSELKGTTLQKLDSNKLYVQKNN
QSLAFGKSKASDFRKTNSDGRGYQPMLTEIKAANFSQSGKIIKLDLTFKDGLERTFVYAFHEKN

Nucleotide

• Length: 435 bp

>NTDB_id=50734 SMULJ23_RS01090 WP_002274770.1 252031..252465(+) (comYF) [Streptococcus mutans LJ23]
TTGTTAAAAAGTAAATTGAAAGCTTTCACACTTTTAGAGTGTCTCCTTGCTTTGCTTGTCATTGCTGGTAGTGTATCTGT
TTATAATGGTCTAACTAAAGCTATTAGTAGTAATATTCATTACTTATCAAAAAATCAAGAAGATGCTTGGTTACTTTTTT
GTCAGCAATTTCGGTCTGAACTTAAAGGAACGACTTTGCAAAAATTGGATAGCAATAAGCTTTATGTTCAAAAAAATAAT
CAAAGTTTAGCCTTTGGTAAATCAAAAGCAAGTGATTTTAGAAAGACTAACAGTGATGGACGTGGTTATCAGCCTATGTT
GACGGAGATCAAAGCTGCTAATTTTAGTCAATCAGGAAAAATTATTAAATTAGACCTTACTTTCAAAGATGGTTTAGAAA
GGACTTTTGTTTATGCTTTTCATGAAAAAAATTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (36-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	99.306	100	0.993
comYF	Streptococcus mutans UA159	98.611	100	0.986
comGF	Lactococcus lactis subsp. cremoris KW2	43.972	97.917	0.431
comGF/cglF	Streptococcus pneumoniae Rx1	40.299	93.056	0.375
comGF/cglF	Streptococcus pneumoniae D39	40.299	93.056	0.375
comGF/cglF	Streptococcus pneumoniae R6	40.299	93.056	0.375
comGF/cglF	Streptococcus pneumoniae TIGR4	40.299	93.056	0.375
comGF/cglF	Streptococcus mitis NCTC 12261	38.806	93.056	0.361