Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | SALIVA_RS09440 | Genome accession | NC_017595 |
| Coordinates | 2061806..2062120 (-) | Length | 104 a.a. |
| NCBI ID | WP_037611125.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius JIM8777 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2056806..2067120
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SALIVA_RS09400 (SALIVA_1923) | - | 2057070..2057726 (-) | 657 | WP_014635113.1 | CPBP family intramembrane glutamic endopeptidase | - |
| SALIVA_RS09405 (SALIVA_1924) | - | 2057738..2057935 (-) | 198 | WP_014635114.1 | helix-turn-helix transcriptional regulator | - |
| SALIVA_RS09410 (SALIVA_1925) | - | 2058186..2059379 (-) | 1194 | WP_014635115.1 | acetate kinase | - |
| SALIVA_RS09415 (SALIVA_1926) | comYH | 2059436..2060392 (-) | 957 | WP_014635116.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SALIVA_RS09420 (SALIVA_1927) | comGG | 2060437..2060754 (-) | 318 | WP_041826709.1 | competence type IV pilus minor pilin ComGG | - |
| SALIVA_RS09425 (SALIVA_1928) | comYF | 2060732..2061169 (-) | 438 | WP_014635118.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SALIVA_RS09430 (SALIVA_1929) | comGE | 2061156..2061386 (-) | 231 | WP_014635119.1 | competence type IV pilus minor pilin ComGE | - |
| SALIVA_RS09435 (SALIVA_1930) | comYD | 2061418..2061846 (-) | 429 | WP_014632541.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SALIVA_RS09440 (SALIVA_1931) | comYC | 2061806..2062120 (-) | 315 | WP_037611125.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SALIVA_RS09445 (SALIVA_1932) | comYB | 2062129..2063229 (-) | 1101 | WP_148263031.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SALIVA_RS09450 (SALIVA_1933) | comGA/cglA/cilD | 2063111..2064052 (-) | 942 | WP_002887018.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SALIVA_RS09455 (SALIVA_1934) | - | 2064132..2064494 (-) | 363 | WP_014635121.1 | DUF1033 family protein | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11428.31 Da Isoelectric Point: 9.7150
>NTDB_id=49497 SALIVA_RS09440 WP_037611125.1 2061806..2062120(-) (comYC) [Streptococcus salivarius JIM8777]
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=49497 SALIVA_RS09440 WP_037611125.1 2061806..2062120(-) (comYC) [Streptococcus salivarius JIM8777]
TTGAAAAAATTGAATGCCGTTAAATTACGTGCTTTTACGCTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTAGCCGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
TTGAAAAAATTGAATGCCGTTAAATTACGTGCTTTTACGCTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTAGCCGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus mutans UA140 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus mutans UA159 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
64.762 |
100 |
0.654 |
| comGC/cglC | Streptococcus mitis SK321 |
63.636 |
95.192 |
0.606 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
59.406 |
97.115 |
0.577 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
58.416 |
97.115 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae R6 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae D39 |
59.596 |
95.192 |
0.567 |
| comYC | Streptococcus suis isolate S10 |
61.364 |
84.615 |
0.519 |
| comGC | Staphylococcus aureus MW2 |
50 |
75 |
0.375 |
| comGC | Staphylococcus aureus N315 |
50 |
75 |
0.375 |