Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SALIVA_RS09445 Genome accession   NC_017595
Coordinates   2062129..2063229 (-) Length   366 a.a.
NCBI ID   WP_148263031.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2057129..2068229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS09405 (SALIVA_1924) - 2057738..2057935 (-) 198 WP_014635114.1 helix-turn-helix transcriptional regulator -
  SALIVA_RS09410 (SALIVA_1925) - 2058186..2059379 (-) 1194 WP_014635115.1 acetate kinase -
  SALIVA_RS09415 (SALIVA_1926) comYH 2059436..2060392 (-) 957 WP_014635116.1 class I SAM-dependent methyltransferase Machinery gene
  SALIVA_RS09420 (SALIVA_1927) comGG 2060437..2060754 (-) 318 WP_041826709.1 competence type IV pilus minor pilin ComGG -
  SALIVA_RS09425 (SALIVA_1928) comYF 2060732..2061169 (-) 438 WP_014635118.1 competence type IV pilus minor pilin ComGF Machinery gene
  SALIVA_RS09430 (SALIVA_1929) comGE 2061156..2061386 (-) 231 WP_014635119.1 competence type IV pilus minor pilin ComGE -
  SALIVA_RS09435 (SALIVA_1930) comYD 2061418..2061846 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  SALIVA_RS09440 (SALIVA_1931) comYC 2061806..2062120 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  SALIVA_RS09445 (SALIVA_1932) comYB 2062129..2063229 (-) 1101 WP_148263031.1 competence type IV pilus assembly protein ComGB Machinery gene
  SALIVA_RS09450 (SALIVA_1933) comGA/cglA/cilD 2063111..2064052 (-) 942 WP_002887018.1 competence type IV pilus ATPase ComGA Machinery gene
  SALIVA_RS09455 (SALIVA_1934) - 2064132..2064494 (-) 363 WP_014635121.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41650.75 Da        Isoelectric Point: 10.1478

>NTDB_id=49498 SALIVA_RS09445 WP_148263031.1 2062129..2063229(-) (comYB) [Streptococcus salivarius JIM8777]
MPVKISKATRQPAGTSSWKAWLNKDISLKGISKGKKLKINQQLKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFASVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKENWAVQLVQIFPQLFFVTLCGLLVLSLILYLWVKRQPALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGIDLLDLVALMKEQKSKLFRELGTDLEEALMLGQSFPDRIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFVIVAVVIVMIYAAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=49498 SALIVA_RS09445 WP_148263031.1 2062129..2063229(-) (comYB) [Streptococcus salivarius JIM8777]
TTGCCAGTGAAAATTTCCAAAGCCACTCGTCAACCAGCTGGAACCAGCAGTTGGAAGGCTTGGTTAAACAAGGATATCTC
ACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAACTCAAGGTTATCCAGCTTTTCAAACAACTTCTAA
AGGCAGGGTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGTTGAAAGAATCGTCCTTGTCTCTTATG
AAAGCGAGTTTAATGCGAGGCGACAGGTTGGACCAGATGTTTGCGTCAGTAGGTTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAATCTTCTAGGGAGTTTAACCAAGATTGAAACCTACATGCTTCGTATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCGACCTATCCTATTCTACTTCTGGGGTTCCTGATTCTGATTATGTTGGGGCTCAAAAAT
TATCTTTTACCTCAATTGTTAGAGGGGGATGGTAAGGAGAATTGGGCTGTACAGTTGGTTCAGATTTTTCCCCAGCTCTT
TTTTGTGACTTTGTGCGGACTGCTTGTATTAAGCTTAATTCTCTATCTATGGGTGAAACGCCAGCCAGCCCTTGTCTTTT
ATCGACGAATGGCAAAAATCCCTTTTATAGGCCAAACTGTCAGGCTATATACGACCGCCTATTATGCTAGAGAATGGGGA
AATCTCTTAGGGCAAGGTATTGACTTGCTAGACTTGGTTGCTCTAATGAAAGAGCAAAAGTCCAAGCTCTTTCGTGAGCT
GGGGACTGATTTAGAAGAAGCCTTGATGCTAGGACAGAGTTTTCCTGACCGTATTGCTAGTCACCCTTTCTTCACTAAGG
AACTATCCTTAATTATTGCTTATGGAGAGGCTAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCTATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

55.102

93.716

0.516
  comYB Streptococcus mutans UA159

55.102

93.716

0.516
  comYB Streptococcus gordonii str. Challis substr. CH1

51.603

93.716

0.484
  comGB/cglB Streptococcus mitis NCTC 12261

50.147

92.623

0.464
  comGB/cglB Streptococcus mitis SK321

49.408

92.35

0.456
  comGB/cglB Streptococcus pneumoniae Rx1

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae D39

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae R6

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae TIGR4

49.112

92.35

0.454
  comGB Lactococcus lactis subsp. cremoris KW2

44.681

89.891

0.402

Multiple sequence alignment