Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SALIVA_RS09415 Genome accession   NC_017595
Coordinates   2059436..2060392 (-) Length   318 a.a.
NCBI ID   WP_014635116.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2054436..2065392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS09385 (SALIVA_1920) proC 2054973..2055743 (+) 771 WP_013991257.1 pyrroline-5-carboxylate reductase -
  SALIVA_RS09390 (SALIVA_1921) - 2055770..2056432 (-) 663 WP_014635111.1 CPBP family intramembrane glutamic endopeptidase -
  SALIVA_RS09395 (SALIVA_1922) - 2056546..2056992 (-) 447 WP_014635112.1 hypothetical protein -
  SALIVA_RS09400 (SALIVA_1923) - 2057070..2057726 (-) 657 WP_014635113.1 CPBP family intramembrane glutamic endopeptidase -
  SALIVA_RS09405 (SALIVA_1924) - 2057738..2057935 (-) 198 WP_014635114.1 helix-turn-helix transcriptional regulator -
  SALIVA_RS09410 (SALIVA_1925) - 2058186..2059379 (-) 1194 WP_014635115.1 acetate kinase -
  SALIVA_RS09415 (SALIVA_1926) comYH 2059436..2060392 (-) 957 WP_014635116.1 class I SAM-dependent methyltransferase Machinery gene
  SALIVA_RS09420 (SALIVA_1927) comGG 2060437..2060754 (-) 318 WP_041826709.1 competence type IV pilus minor pilin ComGG -
  SALIVA_RS09425 (SALIVA_1928) comYF 2060732..2061169 (-) 438 WP_014635118.1 competence type IV pilus minor pilin ComGF Machinery gene
  SALIVA_RS09430 (SALIVA_1929) comGE 2061156..2061386 (-) 231 WP_014635119.1 competence type IV pilus minor pilin ComGE -
  SALIVA_RS09435 (SALIVA_1930) comYD 2061418..2061846 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  SALIVA_RS09440 (SALIVA_1931) comYC 2061806..2062120 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  SALIVA_RS09445 (SALIVA_1932) comYB 2062129..2063229 (-) 1101 WP_148263031.1 competence type IV pilus assembly protein ComGB Machinery gene
  SALIVA_RS09450 (SALIVA_1933) comGA/cglA/cilD 2063111..2064052 (-) 942 WP_002887018.1 competence type IV pilus ATPase ComGA Machinery gene
  SALIVA_RS09455 (SALIVA_1934) - 2064132..2064494 (-) 363 WP_014635121.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35761.63 Da        Isoelectric Point: 4.3482

>NTDB_id=49494 SALIVA_RS09415 WP_014635116.1 2059436..2060392(-) (comYH) [Streptococcus salivarius JIM8777]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALDLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=49494 SALIVA_RS09415 WP_014635116.1 2059436..2060392(-) (comYH) [Streptococcus salivarius JIM8777]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCTCTTGATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAACTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCTGATGCTATTGGATTTATCATCCTCTACCTACTCGAAGGGTTGACCAA
GGATGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAGACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATTCAAGAAGATGCTGTTCGACCACATATTCTCAAAGAGAGTGATGTTATTATCAGTGACCTACCTGTTGG
TTATTACCCAAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACCGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACCTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGTG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.159

99.057

0.695
  comYH Streptococcus mutans UA140

70.159

99.057

0.695

Multiple sequence alignment