Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | IL982_RS03250 | Genome accession | NZ_CP063049 |
| Coordinates | 606560..606820 (+) | Length | 86 a.a. |
| NCBI ID | WP_394799286.1 | Uniprot ID | - |
| Organism | Photobacterium damselae subsp. damselae strain KC-Dl-1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 601560..611820
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IL982_RS03240 (IL982_03240) | hupB | 603849..604121 (+) | 273 | WP_005298263.1 | nucleoid-associated protein HU-beta | - |
| IL982_RS03245 (IL982_03245) | ppiD | 604472..606370 (+) | 1899 | WP_188013849.1 | peptidylprolyl isomerase | - |
| IL982_RS03250 (IL982_03250) | comEA | 606560..606820 (+) | 261 | WP_394799286.1 | ComEA family DNA-binding protein | Machinery gene |
| IL982_RS03255 (IL982_03255) | - | 606905..607243 (-) | 339 | WP_086367255.1 | DUF1971 domain-containing protein | - |
| IL982_RS03260 (IL982_03260) | rrtA | 607330..607887 (-) | 558 | WP_197573643.1 | rhombosortase | - |
| IL982_RS03265 (IL982_03265) | - | 607897..608517 (+) | 621 | WP_086367253.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| IL982_RS03270 (IL982_03270) | - | 608771..610099 (-) | 1329 | WP_086367252.1 | anti-phage deoxyguanosine triphosphatase | - |
| IL982_RS03275 (IL982_03275) | yfbR | 610099..610683 (-) | 585 | WP_197573644.1 | 5'-deoxynucleotidase | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9515.99 Da Isoelectric Point: 5.1351
>NTDB_id=492558 IL982_RS03250 WP_394799286.1 606560..606820(+) (comEA) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
MTLAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MTLAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=492558 IL982_RS03250 WP_394799286.1 606560..606820(+) (comEA) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
ATGACATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATTCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGCATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
ATGACATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATTCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGCATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
53.846 |
100 |
0.57 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
53.333 |
100 |
0.558 |
| comEA | Vibrio cholerae C6706 |
57.353 |
79.07 |
0.453 |
| comEA | Vibrio cholerae strain A1552 |
57.353 |
79.07 |
0.453 |
| comEA | Acinetobacter baylyi ADP1 |
57.812 |
74.419 |
0.43 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.667 |
69.767 |
0.395 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.738 |
70.93 |
0.395 |
| comA | Synechocystis sp. PCC 6803 |
43.421 |
88.372 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.613 |
72.093 |
0.372 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50 |
72.093 |
0.36 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
49.206 |
73.256 |
0.36 |