Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   TL13_RS09925 Genome accession   NC_021213
Coordinates   2013673..2014767 (+) Length   364 a.a.
NCBI ID   WP_002936177.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2008673..2019767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS09895 (TL13_1977) - 2008695..2008895 (-) 201 WP_015647585.1 helix-turn-helix transcriptional regulator -
  TL13_RS09900 - 2009104..2009637 (+) 534 WP_024407928.1 helix-turn-helix transcriptional regulator -
  TL13_RS10545 - 2010469..2012038 (+) 1570 Protein_1921 IS3 family transposase -
  TL13_RS09915 (TL13_1981) - 2012038..2013149 (+) 1112 Protein_1922 tyrosine-type recombinase/integrase -
  TL13_RS09920 (TL13_1983) yaaA 2013287..2013670 (+) 384 WP_002936175.1 S4 domain-containing protein YaaA -
  TL13_RS09925 (TL13_1984) recF 2013673..2014767 (+) 1095 WP_002936177.1 DNA replication/repair protein RecF Machinery gene
  TL13_RS09930 (TL13_1985) guaB 2015036..2016517 (-) 1482 WP_015647590.1 IMP dehydrogenase -
  TL13_RS09935 (TL13_1986) trpS 2016749..2017774 (-) 1026 WP_014736602.1 tryptophan--tRNA ligase -
  TL13_RS09940 (TL13_1988) - 2018129..2019001 (+) 873 WP_015647591.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42217.34 Da        Isoelectric Point: 7.2235

>NTDB_id=48684 TL13_RS09925 WP_002936177.1 2013673..2014767(+) (recF) [Streptococcus suis TL13]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=48684 TL13_RS09925 WP_002936177.1 2013673..2014767(+) (recF) [Streptococcus suis TL13]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCAAAACTTTCTAATTA
CATTGGACATATGAACGTCGTCCTATTTGCTCCAGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATTAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTATCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.083

99.176

0.695
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442

Multiple sequence alignment