Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   J7U05_RS00880 Genome accession   NZ_CP072443
Coordinates   147629..148126 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain S24724     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 142629..153126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U05_RS00845 (J7U05_00830) - 142630..143444 (-) 815 Protein_112 ISL3 family transposase -
  J7U05_RS00850 (J7U05_00835) - 143737..143958 (+) 222 WP_002948904.1 DUF4649 family protein -
  J7U05_RS00855 (J7U05_00840) - 144043..144365 (-) 323 Protein_114 transposase -
  J7U05_RS00860 (J7U05_00845) - 144554..144880 (+) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  J7U05_RS00865 (J7U05_00850) - 144962..146152 (+) 1191 WP_372430777.1 class I SAM-dependent methyltransferase -
  J7U05_RS00870 (J7U05_00855) - 146411..146875 (-) 465 Protein_117 transposase family protein -
  J7U05_RS00875 (J7U05_00860) - 147233..147337 (+) 105 Protein_118 IS200/IS605 family transposase -
  J7U05_RS00880 (J7U05_00865) comX 147629..148126 (+) 498 WP_002949220.1 sigma factor Regulator
  J7U05_RS00885 (J7U05_00870) - 148226..149068 (-) 843 WP_011225338.1 mechanosensitive ion channel family protein -
  J7U05_RS00890 (J7U05_00875) tig 149209..150492 (+) 1284 WP_011680653.1 trigger factor -
  J7U05_RS00895 (J7U05_00880) rpoE 150650..151225 (+) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  J7U05_RS00900 (J7U05_00885) - 151476..153080 (+) 1605 WP_002949230.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=483560 J7U05_RS00880 WP_002949220.1 147629..148126(+) (comX) [Streptococcus thermophilus strain S24724]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=483560 J7U05_RS00880 WP_002949220.1 147629..148126(+) (comX) [Streptococcus thermophilus strain S24724]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.