Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IC788_RS17050 Genome accession   NZ_CP061596
Coordinates   3625439..3626860 (+) Length   473 a.a.
NCBI ID   WP_191000821.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS59     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3620439..3631860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS17030 (IC788_17030) thrC 3620696..3621835 (+) 1140 WP_019457006.1 threonine synthase -
  IC788_RS17035 (IC788_17035) pbpG 3621943..3622989 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC788_RS17040 (IC788_17040) - 3623201..3623836 (+) 636 WP_019457005.1 response regulator -
  IC788_RS17045 (IC788_17045) pilS 3623847..3625415 (+) 1569 WP_213074415.1 sensor histidine kinase Regulator
  IC788_RS17050 (IC788_17050) pilR 3625439..3626860 (+) 1422 WP_191000821.1 sigma-54-dependent transcriptional regulator Regulator
  IC788_RS17055 (IC788_17055) - 3626864..3628048 (-) 1185 WP_191000822.1 S41 family peptidase -
  IC788_RS17060 (IC788_17060) gpmI 3628064..3629611 (-) 1548 WP_191000823.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IC788_RS17065 (IC788_17065) lptG 3629737..3630807 (-) 1071 WP_019457001.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53201.35 Da        Isoelectric Point: 6.5064

>NTDB_id=483459 IC788_RS17050 WP_191000821.1 3625439..3626860(+) (pilR) [Acinetobacter seifertii strain AS59]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVNKPINQVHLDQLLQKALNRQQTDQDFAETALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPLGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETSPKQLSDAAETYLLQQHFPGNVRELRNMIERAITLSDDAQIDVPHLHPAPLRANISSSVPLVSQT
IQNNVTTPQVVKKLPTEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=483459 IC788_RS17050 WP_191000821.1 3625439..3626860(+) (pilR) [Acinetobacter seifertii strain AS59]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGCC
TAACCGATTTAAATCTACCTGATGGTAGCGGGTTAGACTTAGTCAAACATGTCTCTCAAAACTACCCCAACACCCCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTGAATAAACC
TATTAACCAAGTCCATCTAGATCAGTTATTGCAAAAGGCGCTCAATCGGCAACAAACAGATCAAGACTTTGCAGAAACGG
CGCTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATTCAACAATTACGCATTGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCTGTATTTGTTACGGGTGAGTCAGGAACAGGTAAAGAAGTAGTTGCCAACCTAGTTCATCGGTTGAGTAACCG
TAGTGAAGGTCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACTGAACTCATGGAAAGTGAGCTGTTTGGACATAAAA
AAGGCAGTTTTACTGGAGCAACTCAAGATAAACAGGGTCTGATTTTATCGGCTCACGGCGGTAGTTTATTTTTAGATGAA
ATTGCAGAATTACCACTCAGTATGCAAGTCAAACTACTGCGTGCGGTACAGGAAAAAAAGATCCGTCCTCTCGGTTCCGA
TCAGGAAATTGATGTTGATTTCCGTGTCATTAGTGCAAGCCATCAAGACTTGGATTTATTGGTTAGACAAGGCAAATTCC
GTCAGGATTTGTTTTTCCGTATCCATGTTATGGATTTGATGTTACCACCGCTACGAGAACGTGGCGAAGATGTCCTTTTA
CTTGCAAATCACTTTATTCAGAAAATTTGCATGGAGTGGGAAACATCACCCAAACAATTAAGCGACGCAGCCGAGACTTA
TCTCTTACAGCAACACTTTCCTGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGAGCAATCACCCTAAGTGATGATG
CTCAAATTGATGTACCACACTTACATCCAGCACCATTAAGAGCAAATATCTCTAGCTCAGTACCATTGGTATCTCAGACT
ATACAAAATAACGTGACAACGCCTCAAGTTGTAAAAAAATTGCCAACTGAAGGATTGGAGCGTTATTTAGAGAACATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAACAGAACTTTAGCAGCAAAAAAACTAGGAATGACGTTTC
GTTCTTTACGTTATCGTTTGAAAAAATTTGGCTTAGACACCGAGACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

93.235

100

0.932
  pilR Pseudomonas aeruginosa PAK

50.109

97.04

0.486