Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   J7U07_RS00840 Genome accession   NZ_CP072433
Coordinates   140917..141414 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain S24743     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 135917..146414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U07_RS00805 (J7U07_00795) - 135917..136731 (-) 815 Protein_104 ISL3 family transposase -
  J7U07_RS00810 (J7U07_00800) - 137024..137245 (+) 222 WP_002948904.1 DUF4649 family protein -
  J7U07_RS00815 (J7U07_00805) - 137330..137652 (-) 323 Protein_106 transposase -
  J7U07_RS00820 (J7U07_00810) - 137841..138167 (+) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  J7U07_RS00825 (J7U07_00815) - 138249..139439 (+) 1191 WP_011680651.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  J7U07_RS00830 (J7U07_00820) - 139699..140163 (-) 465 Protein_109 transposase family protein -
  J7U07_RS00835 (J7U07_00825) - 140521..140625 (+) 105 Protein_110 IS200/IS605 family transposase -
  J7U07_RS00840 (J7U07_00830) comX 140917..141414 (+) 498 WP_002949220.1 sigma factor Regulator
  J7U07_RS00845 (J7U07_00835) - 141514..142356 (-) 843 WP_207560153.1 mechanosensitive ion channel family protein -
  J7U07_RS00850 (J7U07_00840) tig 142497..143780 (+) 1284 WP_011680653.1 trigger factor -
  J7U07_RS00855 (J7U07_00845) rpoE 143938..144513 (+) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  J7U07_RS00860 (J7U07_00850) - 144764..146368 (+) 1605 WP_002949230.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=482532 J7U07_RS00840 WP_002949220.1 140917..141414(+) (comX) [Streptococcus thermophilus strain S24743]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=482532 J7U07_RS00840 WP_002949220.1 140917..141414(+) (comX) [Streptococcus thermophilus strain S24743]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCGTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGTTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.