Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   H9N23_RS10615 Genome accession   NZ_CP060817
Coordinates   2308029..2308454 (-) Length   141 a.a.
NCBI ID   WP_011408068.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain C9-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2303029..2313454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9N23_RS10600 (H9N23_10580) - 2304169..2305695 (-) 1527 WP_042464666.1 membrane protein -
  H9N23_RS10605 (H9N23_10585) - 2305665..2306294 (-) 630 WP_011408070.1 hypothetical protein -
  H9N23_RS10610 (H9N23_10590) - 2306305..2307894 (-) 1590 WP_011408069.1 phosphoethanolamine transferase -
  H9N23_RS10615 (H9N23_10595) pilA2 2308029..2308454 (-) 426 WP_011408068.1 pilin Machinery gene
  H9N23_RS10620 (H9N23_10600) pilC 2308809..2310068 (+) 1260 WP_011408067.1 type II secretion system F family protein Machinery gene
  H9N23_RS10625 (H9N23_10605) - 2310075..2310938 (+) 864 WP_011258358.1 A24 family peptidase -
  H9N23_RS10630 (H9N23_10610) coaE 2310952..2311560 (+) 609 WP_011258357.1 dephospho-CoA kinase -
  H9N23_RS10635 (H9N23_10615) - 2311631..2312950 (+) 1320 WP_115801881.1 IS701-like element ISXo15 family transposase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14442.76 Da        Isoelectric Point: 9.0090

>NTDB_id=478569 H9N23_RS10615 WP_011408068.1 2308029..2308454(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain C9-3]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=478569 H9N23_RS10615 WP_011408068.1 2308029..2308454(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain C9-3]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

51.471

96.454

0.496
  pilA2 Legionella pneumophila strain ERS1305867

51.471

96.454

0.496
  pilA Ralstonia pseudosolanacearum GMI1000

41.818

100

0.489
  comP Acinetobacter baylyi ADP1

43.537

100

0.454
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.054

100

0.447
  pilE Neisseria gonorrhoeae strain FA1090

37.278

100

0.447
  pilE Neisseria gonorrhoeae MS11

37.5

100

0.426
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.446

98.582

0.418
  pilA/pilAII Pseudomonas stutzeri DSM 10701

42.222

95.745

0.404
  pilA/pilA1 Eikenella corrodens VA1

37.333

100

0.397
  pilA Acinetobacter baumannii strain A118

38.298

100

0.383
  pilA Pseudomonas aeruginosa PAK

36

100

0.383
  pilA Vibrio parahaemolyticus RIMD 2210633

40.157

90.071

0.362