Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   H4W19_RS09310 Genome accession   NZ_CP060028
Coordinates   1956338..1956742 (+) Length   134 a.a.
NCBI ID   WP_221893577.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain GTZY     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1951338..1961742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4W19_RS09300 (H4W19_09300) pilR 1951388..1952788 (+) 1401 WP_185896920.1 sigma-54 dependent transcriptional regulator Regulator
  H4W19_RS09305 (H4W19_09305) - 1952842..1955859 (-) 3018 WP_185896921.1 fused MFS/spermidine synthase -
  H4W19_RS09310 (H4W19_09310) pilA2 1956338..1956742 (+) 405 WP_221893577.1 pilin Machinery gene
  H4W19_RS09315 (H4W19_09315) - 1956842..1958827 (+) 1986 WP_185896923.1 tetratricopeptide repeat protein -
  H4W19_RS09320 (H4W19_09320) - 1958824..1959798 (+) 975 WP_185896924.1 glycosyltransferase family 2 protein -
  H4W19_RS09325 (H4W19_09325) - 1959795..1960403 (+) 609 WP_185896925.1 class I SAM-dependent methyltransferase -
  H4W19_RS09330 (H4W19_09330) - 1960508..1961302 (+) 795 WP_345776409.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 13483.74 Da        Isoelectric Point: 8.4849

>NTDB_id=473416 H4W19_RS09310 WP_221893577.1 1956338..1956742(+) (pilA2) [Pseudoxanthomonas mexicana strain GTZY]
MQGFTLIELMIVIAILGILLAIAIPAYQDYLARARAAEGLNMAAPAKLAVSESTLSSADGKTFPNTATLAGYTAATSKYV
NSIAIAAGKITVTTKATGCAADPVFVLTPAVDAGKVSWKCTASAGAACAPASCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=473416 H4W19_RS09310 WP_221893577.1 1956338..1956742(+) (pilA2) [Pseudoxanthomonas mexicana strain GTZY]
ATGCAGGGCTTCACCCTGATCGAACTGATGATCGTCATCGCCATCCTGGGCATCCTGCTGGCCATCGCCATTCCGGCCTA
TCAGGATTACCTGGCCCGCGCCCGTGCTGCCGAAGGCCTGAACATGGCCGCCCCGGCCAAGCTGGCAGTCTCGGAGTCCA
CCCTCTCCAGCGCGGACGGCAAGACCTTCCCGAACACCGCAACCCTCGCCGGCTACACCGCCGCCACCTCGAAGTACGTC
AACTCCATCGCCATCGCAGCCGGCAAGATCACTGTCACCACCAAGGCCACGGGCTGCGCAGCAGATCCGGTGTTTGTGCT
GACGCCTGCTGTGGACGCTGGCAAGGTGTCGTGGAAGTGCACGGCCTCCGCTGGCGCAGCCTGCGCCCCGGCCTCCTGCC
GCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(32-134)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

51.449

100

0.53
  pilA2 Legionella pneumophila strain ERS1305867

50.725

100

0.522
  pilA Ralstonia pseudosolanacearum GMI1000

39.394

100

0.485
  comP Acinetobacter baylyi ADP1

43.624

100

0.485
  pilA/pilA1 Eikenella corrodens VA1

40.397

100

0.455
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.419

100

0.433
  pilE Neisseria gonorrhoeae MS11

41.732

94.776

0.396
  pilE Neisseria gonorrhoeae strain FA1090

42.063

94.03

0.396
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.41

100

0.388
  pilA Pseudomonas aeruginosa PAK

35.172

100

0.381
  pilA Acinetobacter baumannii strain A118

35.714

100

0.373
  pilA Haemophilus influenzae Rd KW20

38.583

94.776

0.366