Detailed information NTG0473415

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: H4W19_RS09300
• Genome accession: NZ_CP060028
• Coordinates: 1951388..1952788 (+)
• Length: 466 a.a.
• NCBI ID: WP_185896920.1
• Uniprot ID: -
• Organism: Pseudoxanthomonas mexicana strain GTZY
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1946388..1957788

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4W19_RS09280 (H4W19_09280)	-	1946597..1947172 (-)	576	WP_260619043.1	sigma-70 family RNA polymerase sigma factor	-
H4W19_RS09285 (H4W19_09285)	sucD	1947295..1948173 (-)	879	WP_185896917.1	succinate--CoA ligase subunit alpha	-
H4W19_RS09290 (H4W19_09290)	sucC	1948198..1949367 (-)	1170	WP_185896918.1	ADP-forming succinate--CoA ligase subunit beta	-
H4W19_RS09295 (H4W19_09295)	-	1949568..1951190 (+)	1623	WP_185896919.1	HAMP domain-containing sensor histidine kinase	-
H4W19_RS09300 (H4W19_09300)	pilR	1951388..1952788 (+)	1401	WP_185896920.1	sigma-54 dependent transcriptional regulator	Regulator
H4W19_RS09305 (H4W19_09305)	-	1952842..1955859 (-)	3018	WP_185896921.1	fused MFS/spermidine synthase	-
H4W19_RS09310 (H4W19_09310)	pilA2	1956338..1956742 (+)	405	WP_221893577.1	pilin	Machinery gene

Sequence

Protein

• Length: 466 a.a.
• Molecular weight: 50514.74 Da
• Isoelectric Point: 5.5505

>NTDB_id=473415 H4W19_RS09300 WP_185896920.1 1951388..1952788(+) (pilR) [Pseudoxanthomonas mexicana strain GTZY]
MNQSRSALIVDDERDIRELLTLTLGRMGLRIDTAANVGEARELLARNTYDLCFTDMRLPDGNGIDLVGEIARNYPNTPVA
MITAFGNIELAVEALKAGAFDFVSKPVDLAVLRGLVKHALELNNADRTPPPPPPPEQASRLLGSSAAMDALRDTIAKVAR
SQAPVYIMGESGTGKELVARTIHEQGARASGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKQGLFQAANGGTLFLD
EVAELPLPMQVKLLRAIQEKAVRPVGASGEVQVDVRILSATHKDLGELAADGRFRHDLYYRINVIELRVPPLRERTGDLA
QLTSAILDRLAAQHGRMAPSVSPEAMEALGRYPFPGNVRELENILERALAMSEGHSIEIDDLYLPQAPAGRKFGGDFNPG
EVVRDAPGAVDVDPAAGALPDYIEQLERAAIQKALEENRWNKTKAAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1401 bp

>NTDB_id=473415 H4W19_RS09300 WP_185896920.1 1951388..1952788(+) (pilR) [Pseudoxanthomonas mexicana strain GTZY]
ATGAATCAAAGCCGTAGCGCCCTGATCGTCGACGACGAACGCGACATCCGAGAATTGCTGACACTGACGCTGGGCCGCAT
GGGCCTGCGCATCGACACCGCCGCCAACGTGGGCGAAGCCCGCGAACTGCTGGCCCGCAACACCTACGATCTGTGCTTCA
CCGACATGCGCCTGCCTGACGGCAACGGCATCGACCTGGTCGGCGAGATCGCGCGCAACTATCCGAATACGCCAGTGGCG
ATGATCACCGCCTTCGGCAACATCGAGCTGGCCGTGGAGGCGCTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCCGT
GGACCTGGCCGTGCTGCGTGGCCTGGTGAAGCATGCGCTGGAACTGAACAACGCCGACCGCACACCGCCACCCCCGCCGC
CCCCGGAACAGGCCAGTCGCCTGCTGGGCAGTTCGGCGGCGATGGACGCGCTGCGCGACACCATTGCCAAGGTGGCCCGC
AGCCAGGCGCCGGTCTACATCATGGGCGAGTCCGGCACCGGCAAGGAGCTGGTGGCCCGCACCATCCACGAACAGGGCGC
GCGCGCGTCCGGCCCCTTCGTACCGGTCAACTGCGGCGCCATTCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCAGGGCCTATTCCAGGCGGCCAACGGCGGCACGCTGTTCCTGGAC
GAGGTGGCCGAGCTGCCGCTGCCCATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAGAAGGCGGTGCGTCCGGTCGGCGC
CTCCGGCGAGGTGCAGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGATCTGGGCGAGCTGGCGGCCGATGGCCGCT
TCCGCCATGACCTGTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCACGGGCGATCTGGCG
CAGCTGACCAGCGCCATCCTGGATCGCCTGGCGGCCCAGCACGGGCGCATGGCGCCGTCGGTGTCGCCTGAAGCGATGGA
GGCGCTGGGGCGCTATCCGTTCCCGGGCAATGTGCGCGAACTGGAGAACATCCTGGAGCGCGCGCTGGCCATGTCCGAGG
GCCACAGCATCGAGATCGACGACCTCTACCTGCCGCAGGCCCCGGCCGGCAGGAAGTTCGGCGGCGACTTCAACCCCGGC
GAAGTGGTGCGCGACGCGCCCGGCGCCGTCGACGTGGACCCCGCCGCGGGCGCCCTGCCCGACTACATCGAGCAGTTGGA
GCGCGCGGCCATCCAGAAGGCCCTGGAAGAGAACCGCTGGAACAAGACCAAGGCGGCGGCCCAGCTGGGCATCACCTTCC
GCGCCTTGCGCTACAAGCTGAAGAAGCTCGGGATGGAGTAG

Domains

Predicted by InterProScan.

• Response regulator receiver domain (Response_reg) (8-114)

• Bacterial regulatory protein, Fis family (HTH_8) (423-463)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.935	99.785	0.618
pilR	Acinetobacter baumannii strain A118	48.283	100	0.483