Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   JQR77_RS00975 Genome accession   NZ_CP069275
Coordinates   162559..163056 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain EG007     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 157559..168056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQR77_RS09720 - 158189..158444 (-) 256 Protein_131 ISL3 family transposase -
  JQR77_RS00945 (JQR77_00925) - 158647..158868 (+) 222 WP_002948904.1 DUF4649 family protein -
  JQR77_RS00950 (JQR77_00930) - 158953..159269 (-) 317 Protein_133 transposase -
  JQR77_RS00955 (JQR77_00935) - 159465..159809 (+) 345 WP_023909336.1 aminoacylase -
  JQR77_RS00960 (JQR77_00940) - 159891..161081 (+) 1191 WP_084825614.1 SAM-dependent methyltransferase -
  JQR77_RS00965 (JQR77_00945) - 161341..161805 (-) 465 Protein_136 transposase family protein -
  JQR77_RS00970 (JQR77_00950) - 162163..162267 (+) 105 Protein_137 IS200/IS605 family transposase -
  JQR77_RS00975 (JQR77_00955) comX 162559..163056 (+) 498 WP_002949220.1 sigma factor Regulator
  JQR77_RS00980 (JQR77_00960) - 163156..163998 (-) 843 WP_023909339.1 mechanosensitive ion channel family protein -
  JQR77_RS00985 (JQR77_00965) tig 164139..165422 (+) 1284 WP_011680653.1 trigger factor -
  JQR77_RS00990 (JQR77_00970) rpoE 165580..166147 (+) 568 Protein_141 DNA-directed RNA polymerase subunit delta -
  JQR77_RS00995 (JQR77_00975) - 166398..168002 (+) 1605 WP_002949230.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=464617 JQR77_RS00975 WP_002949220.1 162559..163056(+) (comX) [Streptococcus thermophilus strain EG007]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=464617 JQR77_RS00975 WP_002949220.1 162559..163056(+) (comX) [Streptococcus thermophilus strain EG007]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.