Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   HRE60_RS00720 Genome accession   NZ_CP054153
Coordinates   124705..125202 (+) Length   165 a.a.
NCBI ID   WP_002885610.1    Uniprot ID   A0A2I1TJX9
Organism   Streptococcus salivarius strain DB-B5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 119705..130202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS00720 (HRE60_00720) comX 124705..125202 (+) 498 WP_002885610.1 sigma factor Regulator
  HRE60_RS00725 (HRE60_00725) - 125310..126152 (-) 843 WP_181670861.1 mechanosensitive ion channel family protein -
  HRE60_RS00730 (HRE60_00730) tig 126295..127578 (+) 1284 WP_181670862.1 trigger factor -
  HRE60_RS00735 (HRE60_00735) rpoE 127736..128311 (+) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  HRE60_RS00740 (HRE60_00740) - 128564..130168 (+) 1605 WP_002885608.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20008.84 Da        Isoelectric Point: 4.9953

>NTDB_id=451142 HRE60_RS00720 WP_002885610.1 124705..125202(+) (comX) [Streptococcus salivarius strain DB-B5]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDLADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=451142 HRE60_RS00720 WP_002885610.1 124705..125202(+) (comX) [Streptococcus salivarius strain DB-B5]
ATGGAACAAGAAGTTTTTGTTCATGCATATGAAGTTGTAAGGCCGATTGTACTTAAGGCTAGTAGACAATATTTCATCCA
ACTTTGGGACCTTGCTGATATGGAGCAAGAGGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGTTACGGCGTTATTTTAAAACTAAATTTAGGAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGTCAAGCTAATCGACAATGTTATATTGAAATTTCAGATATTGCTTTTTGTCTTCCAAATAAAGAGTTAGATGC
TGTTGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTTTGCTAGCTGGGGAGTGTTTTAGAGGTCGTAAAAAGATGATTCGAGAGTTAAAATTTTGGATGGTTGATTTTGATCCT
TACAATGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I1TJX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.