Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   STCNRZ1575_RS00920 Genome accession   NZ_CP065490
Coordinates   152257..152754 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 147257..157754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS00900 (STCNRZ1575_00900) - 149142..149486 (+) 345 WP_023909336.1 aminoacylase -
  STCNRZ1575_RS00905 (STCNRZ1575_00905) - 149589..150779 (+) 1191 WP_084825614.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  STCNRZ1575_RS00910 (STCNRZ1575_00910) - 151039..151503 (-) 465 Protein_112 transposase family protein -
  STCNRZ1575_RS00915 (STCNRZ1575_00915) - 151861..151950 (+) 90 Protein_113 IS200/IS605 family transposase -
  STCNRZ1575_RS00920 (STCNRZ1575_00920) comX 152257..152754 (+) 498 WP_002949220.1 sigma factor Regulator
  STCNRZ1575_RS00925 (STCNRZ1575_00925) - 152854..153696 (-) 843 WP_011225338.1 mechanosensitive ion channel family protein -
  STCNRZ1575_RS00930 (STCNRZ1575_00930) tig 153837..155120 (+) 1284 WP_011680653.1 trigger factor -
  STCNRZ1575_RS00935 (STCNRZ1575_00935) rpoE 155278..155853 (+) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  STCNRZ1575_RS00940 (STCNRZ1575_00940) - 156104..157708 (+) 1605 WP_002949230.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=448694 STCNRZ1575_RS00920 WP_002949220.1 152257..152754(+) (comX) [Streptococcus thermophilus strain CNRZ1575]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=448694 STCNRZ1575_RS00920 WP_002949220.1 152257..152754(+) (comX) [Streptococcus thermophilus strain CNRZ1575]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.