Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   HQ398_RS09735 Genome accession   NZ_CP053882
Coordinates   2134168..2135307 (+) Length   379 a.a.
NCBI ID   WP_041208567.1    Uniprot ID   -
Organism   Aeromonas jandaei strain 3036     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2129168..2140307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ398_RS09710 (HQ398_09710) - 2129416..2130483 (+) 1068 WP_201908035.1 3-deoxy-7-phosphoheptulonate synthase -
  HQ398_RS09715 (HQ398_09715) - 2131023..2131808 (-) 786 WP_215808250.1 ATP-binding cassette domain-containing protein -
  HQ398_RS09720 (HQ398_09720) btuC 2131795..2132802 (-) 1008 WP_215808251.1 vitamin B12 ABC transporter permease BtuC -
  HQ398_RS09725 (HQ398_09725) - 2132905..2133639 (-) 735 WP_215808252.1 transporter substrate-binding domain-containing protein -
  HQ398_RS09730 (HQ398_09730) - 2133752..2134108 (+) 357 WP_215808253.1 DMT family protein -
  HQ398_RS09735 (HQ398_09735) pilU 2134168..2135307 (+) 1140 WP_041208567.1 type IVa pilus ATPase TapW Machinery gene
  HQ398_RS09740 (HQ398_09740) - 2135374..2135823 (-) 450 WP_215808254.1 isoprenylcysteine carboxylmethyltransferase family protein -
  HQ398_RS09745 (HQ398_09745) alr 2135999..2137225 (+) 1227 WP_215808255.1 alanine racemase -
  HQ398_RS09750 (HQ398_09750) - 2137282..2138226 (-) 945 WP_041208571.1 TerC family protein -
  HQ398_RS09755 (HQ398_09755) oppF 2138528..2139523 (-) 996 WP_033114332.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42273.33 Da        Isoelectric Point: 6.6722

>NTDB_id=448383 HQ398_RS09735 WP_041208567.1 2134168..2135307(+) (pilU) [Aeromonas jandaei strain 3036]
MELRDMLQTLAKQDGSDLYLSTGAPPCAKFNGVLRPLNETPLNPGDVAAIAEAIMDKEQKEQFERELEMNLAISLPQIGR
FRINIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTTDGGRRAAVEIMLGTHTIRDMIKRGEFGGLKEVMEKSKALGMVTFDSAL
FDLVVEGVIDEEEAVKNADSANNLRLKIKLWKEKGQIASSSDATGWSLEPTKDEKGDHF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=448383 HQ398_RS09735 WP_041208567.1 2134168..2135307(+) (pilU) [Aeromonas jandaei strain 3036]
ATGGAATTGCGAGACATGTTACAGACCCTGGCCAAACAGGATGGCTCCGACCTCTATCTGTCGACCGGCGCCCCCCCCTG
CGCCAAATTCAACGGGGTACTGCGCCCCCTGAATGAGACGCCGCTCAACCCGGGCGATGTGGCGGCCATTGCCGAGGCCA
TCATGGACAAGGAGCAGAAGGAGCAGTTCGAGCGGGAGCTGGAGATGAACCTCGCCATCTCGCTGCCGCAGATCGGCCGT
TTCCGGATCAACATCTTCAAGCAGCGCAACGAAGTGTCGCTGGTGGCGCGCAACATCAAGACCGAGATCCCCCGCTTCGA
AGATCTGAAACTGCCCCCCGTGCTGCTCGATACCATCATGGAGAAGCGCGGACTGGTGCTGTTTGTCGGCGGTACCGGCT
CGGGTAAATCGACCTCGCTGGCGGCGCTTATCGACCATCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAAGAT
CCGGTGGAGTTCGTTCATCGCCACCGCAAGAGCATCATCAACCAGCGGGAAGTGGGCGTGGATACCCGCAGCTTCCACGC
CGCCCTGAAAAACACCCTGCGTCAGGCGCCCGACGTCATCCTTATCGGTGAAATTCGCGACCGCGAGACCATGGAGCATG
CGCTGGCCTTCTCCGAAACCGGCCACCTCGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGGAAGAGCGCCGCCCCCAGCTGCTCAACGACCTTGGCAACAACCTCAAGGCGTTTGTCTCCCAGCG
GCTGGTAAAGACTACCGATGGCGGTCGCCGGGCCGCTGTGGAGATCATGCTGGGCACCCACACCATCCGCGACATGATCA
AACGCGGCGAATTTGGCGGCCTCAAGGAGGTGATGGAGAAATCCAAGGCCCTCGGCATGGTCACCTTCGACAGCGCCCTG
TTCGATCTGGTGGTGGAAGGCGTGATCGACGAGGAGGAGGCGGTGAAGAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GATCAAGCTGTGGAAGGAGAAGGGCCAGATCGCCAGCAGCAGCGATGCCACCGGCTGGAGTCTGGAGCCGACCAAGGACG
AGAAGGGCGACCATTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.211

100

0.544
  pilU Acinetobacter baylyi ADP1

52.676

93.668

0.493
  pilU Vibrio cholerae strain A1552

50.857

92.348

0.47
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.36

93.14

0.385
  pilT Legionella pneumophila strain ERS1305867

42.216

88.127

0.372
  pilT Legionella pneumophila strain Lp02

42.216

88.127

0.372
  pilT Pseudomonas aeruginosa PAK

40.988

90.765

0.372
  pilT Pseudomonas stutzeri DSM 10701

40.698

90.765

0.369
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.441

87.863

0.364
  pilT Vibrio cholerae strain A1552

41.441

87.863

0.364
  pilT Acinetobacter baumannii D1279779

41.018

88.127

0.361
  pilT Acinetobacter baumannii strain A118

41.018

88.127

0.361
  pilT Acinetobacter nosocomialis M2

41.018

88.127

0.361