Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   STMM20_RS09200 Genome accession   NZ_CP065485
Coordinates   1809569..1810066 (-) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain MM20     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804569..1815066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM20_RS09180 (STMM20_09160) - 1804615..1806219 (-) 1605 WP_002949230.1 CTP synthase -
  STMM20_RS09185 (STMM20_09165) rpoE 1806470..1807045 (-) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  STMM20_RS09190 (STMM20_09170) tig 1807203..1808486 (-) 1284 WP_011680653.1 trigger factor -
  STMM20_RS09195 (STMM20_09175) - 1808627..1809469 (+) 843 WP_023909339.1 mechanosensitive ion channel family protein -
  STMM20_RS09200 (STMM20_09180) comX 1809569..1810066 (-) 498 WP_002949220.1 sigma factor Regulator
  STMM20_RS09205 (STMM20_09185) - 1810373..1810462 (-) 90 Protein_1775 IS200/IS605 family transposase -
  STMM20_RS09210 (STMM20_09190) - 1810820..1811284 (+) 465 Protein_1776 transposase family protein -
  STMM20_RS09215 (STMM20_09195) - 1811543..1812733 (-) 1191 WP_011680651.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  STMM20_RS09220 (STMM20_09200) - 1812815..1813141 (-) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=448264 STMM20_RS09200 WP_002949220.1 1809569..1810066(-) (comX) [Streptococcus thermophilus strain MM20]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=448264 STMM20_RS09200 WP_002949220.1 1809569..1810066(-) (comX) [Streptococcus thermophilus strain MM20]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.