Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HPY06_RS01340 Genome accession   NZ_CP053804
Coordinates   287027..288742 (+) Length   571 a.a.
NCBI ID   WP_175229786.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL6Y     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 282027..293742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY06_RS01320 (HPY06_01325) pilM 284320..285336 (+) 1017 WP_175229780.1 type IV pilus assembly protein PilM Machinery gene
  HPY06_RS01325 (HPY06_01330) pilN 285326..285910 (+) 585 WP_175229782.1 PilN domain-containing protein Machinery gene
  HPY06_RS01330 (HPY06_01335) pilO 285903..286493 (+) 591 WP_175229784.1 type 4a pilus biogenesis protein PilO Machinery gene
  HPY06_RS01335 (HPY06_01340) pilP 286483..287001 (+) 519 WP_175231021.1 pilus assembly protein PilP Machinery gene
  HPY06_RS01340 (HPY06_01345) pilQ 287027..288742 (+) 1716 WP_175229786.1 type IV pilus secretin PilQ Machinery gene
  HPY06_RS01345 (HPY06_01350) aroK 288929..289453 (+) 525 WP_000818616.1 shikimate kinase AroK -
  HPY06_RS01350 (HPY06_01355) aroB 289481..290566 (+) 1086 WP_175229788.1 3-dehydroquinate synthase -
  HPY06_RS01355 (HPY06_01360) - 290621..292096 (+) 1476 WP_069216964.1 AAA family ATPase -
  HPY06_RS01360 (HPY06_01365) - 292166..292999 (+) 834 WP_000744680.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 62370.50 Da        Isoelectric Point: 4.6389

>NTDB_id=447546 HPY06_RS01340 WP_175229786.1 287027..288742(+) (pilQ) [Vibrio cholerae strain SL6Y]
MRNGLKTYVAQTWLTLWVGLALCASSTVFSAEFATTNQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLK
TDVADDKLYLLDVKDFSTPVESVEVFRKAPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKSVLEKEGKLIS
INFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQAL
EKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQ
VQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLG
SGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDL
SVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL
LIFVTPKVVIQ

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=447546 HPY06_RS01340 WP_175229786.1 287027..288742(+) (pilQ) [Vibrio cholerae strain SL6Y]
ATGAGAAATGGATTGAAAACTTATGTCGCACAGACTTGGCTGACCTTATGGGTCGGTTTGGCACTTTGTGCTTCTTCTAC
GGTGTTTAGTGCTGAATTCGCTACTACCAACCAGTTGGAAAATATTGACTTTCGAGTCAACAAAGAGAAAGCGGCGGTCT
TAATTGTCGAATTGGCCTCGCCATCGGCGGTCGTGGATGTGCAAAAAGTCCAAGAAGGGTTGAGCATTGAGCTGCTTAAA
ACCGATGTGGCGGATGACAAGCTGTATCTGCTCGATGTGAAGGATTTTTCAACCCCTGTTGAGAGCGTGGAAGTATTCCG
TAAAGCGCCGAGCACACAACTTGTTGTGACTGTCGATGGTGAGTTTCAGCACGATTACACCTTGAAAGGAAAATACCTTG
AGGTCGTGATCAGTAAACTCAAAGCCGATGAAAAGCCTAAGCCCAAGAGTGTCTTGGAAAAAGAAGGCAAGCTTATCTCA
ATTAACTTCCAAGATATTCCGGTGCGTAACGTACTGCAGCTGATTGCCGATTATAACGGTTTCAACTTAGTGGTTTCCGA
TTCGGTGGTGGGTAACCTGACTTTACGCTTGGATGGCGTGCCTTGGCAGCAAGTGTTGGACATTATTCTGCAAGTCAAAG
GGCTCGATAAACGGGTCGATGGTAATGTGATTTTGATTGCGCCGAAAGAGGAACTCGACTTGCGCGAGAAACAAGCGCTC
GAAAAAGCCCGTTTAGCAGAAGAGTTGGGCGATTTAAAATCAGAAATCATCAAGATTAACTTTGCCAAAGCGTCTGACAT
TGCGGCGATGATCGGCGGTGAAGGCAACGTTAACATGTTGTCTGAACGAGGTTCGATCAGCATCGACGAACGAACTAACT
CGCTATTGATCCGAGAGCTGCCCGATAACATTGCTGTGATCCGCGAGATCATTGAATCGCTGGATATTCCGGTCAAACAA
GTTCAAATCGAAGCGCGGATTGTCACCGTCAAAGAAGGTAACTTGGAGGAGCTTGGGGTACGCTGGGGCGTAATGTCGAC
CAATGGTAGCCACTCGGTCGGAGGAAGCATAGAGAGTAACTTATGGCAAAAAGGGTTATTGGCGGATGATGAATTTCCGG
TGGATGAATTCTTAAATGTGAATTTGGCTTCCACCTCTGCCAATGCGTCTTCGATTGCTTTCCAAGTCGCTAAATTGGGC
TCGGGTACGTTGTTGGATTTGGAGCTTTCAGCATTACAAAATGAATCGAAGGCCGAAATCATCTCTAGCCCTCGCTTGAT
TACTACTAATAAACAGCCTGCCTATATTGAGCAAGGTACTGAGATCCCTTATCTGGAATCGTCCTCCAGTGGTGCCTCTA
CGGTCGCGTTTAAAAAAGCGGTATTGAGCTTGAAGGTGACACCACAAATCACCCCAGATAACCGCTTGGTGCTCGACTTG
AGCGTGACCCAAGACCGACGCGGTGAAACGGTGAAAACCGGTACGGGTGAAGCGGTATCGATCGATACTCAGCGTATTGG
CACTCAAGTGTTGGTGAATAACGGAGAAACTGTGGTGTTGGGTGGTATTTTCCAACACAGCATCAATAATTCGGTAGATA
AGGTGCCACTGCTGGGGGACTTGCCTGTTTTGGGCGCGTTATTCAGACGAACCTATGAGCAAATGGGCAAAAGTGAACTG
CTGATTTTTGTCACGCCGAAAGTGGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(411-569)

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

99.124

100

0.991
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

99.124

100

0.991
  pilQ Vibrio campbellii strain DS40M4

75.648

100

0.767
  pilQ Legionella pneumophila strain ERS1305867

42.78

97.023

0.415
  pilQ Legionella pneumophila strain Lp02

42.78

97.023

0.415
  comQ Acinetobacter baylyi ADP1

38.408

100

0.389
  pilQ Acinetobacter baumannii strain A118

37.866

100

0.385
  pilQ Acinetobacter baumannii D1279779

37.866

100

0.385
  pilQ Pseudomonas aeruginosa PAK

39.344

96.147

0.378