Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HKW97_RS06945 Genome accession   NZ_CP053063
Coordinates   1486936..1487574 (+) Length   212 a.a.
NCBI ID   WP_019365918.1    Uniprot ID   -
Organism   Pseudomonas luteola strain JZ42     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481936..1492574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW97_RS06925 (HKW97_06880) lolD 1481960..1482643 (+) 684 WP_239380289.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  HKW97_RS06930 (HKW97_06885) - 1482678..1483922 (+) 1245 WP_407363102.1 lipoprotein-releasing ABC transporter permease subunit -
  HKW97_RS06935 (HKW97_06890) lolD 1483915..1484598 (+) 684 WP_219652995.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  HKW97_RS06940 (HKW97_06895) comA 1484655..1486886 (+) 2232 WP_407363103.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKW97_RS06945 (HKW97_06900) exbB 1486936..1487574 (+) 639 WP_019365918.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKW97_RS06950 (HKW97_06905) - 1487571..1488011 (+) 441 WP_010797717.1 biopolymer transporter ExbD -
  HKW97_RS06955 (HKW97_06910) lpxK 1488008..1489006 (+) 999 WP_010797718.1 tetraacyldisaccharide 4'-kinase -
  HKW97_RS06960 (HKW97_06915) - 1489032..1489217 (+) 186 WP_010797719.1 Trm112 family protein -
  HKW97_RS06965 (HKW97_06920) kdsB 1489214..1489981 (+) 768 WP_407363104.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKW97_RS06970 (HKW97_06925) - 1489981..1490460 (+) 480 WP_010797721.1 low molecular weight protein-tyrosine-phosphatase -
  HKW97_RS06975 (HKW97_06930) murB 1490441..1491466 (+) 1026 WP_219652998.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23186.34 Da        Isoelectric Point: 6.2585

>NTDB_id=442637 HKW97_RS06945 WP_019365918.1 1486936..1487574(+) (exbB) [Pseudomonas luteola strain JZ42]
MFELVKAGGWMMLPIILSSIVGMAIVAERLWTLRRARVVPPQLLAQVWKWLQDNSLTSEKLKELRANSPLGEVMAAGLAN
SRHGREVMKEAIEEAGSRIVHDLERYLNTLGTIAAMAPLMGLLGTVFGMIEIFSSFMESGLANAPVLAGGISKALLTTAA
GLIVAIPAVFFHRFLLRRVDELIVSMEQESIKLVEVVQGDREVDFVTEGTKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=442637 HKW97_RS06945 WP_019365918.1 1486936..1487574(+) (exbB) [Pseudomonas luteola strain JZ42]
GTGTTCGAACTGGTCAAAGCAGGCGGCTGGATGATGCTGCCAATTATTCTGAGTTCTATTGTAGGCATGGCTATCGTAGC
CGAGCGGTTATGGACACTGCGCCGTGCACGTGTCGTTCCGCCGCAACTGTTGGCTCAGGTATGGAAGTGGCTGCAAGATA
ATTCGCTCACAAGCGAGAAGCTTAAGGAGTTGCGCGCCAATTCGCCTTTGGGTGAGGTAATGGCTGCAGGGCTTGCCAAT
TCCCGTCATGGCCGTGAAGTCATGAAAGAGGCCATTGAAGAGGCTGGTAGCCGCATCGTGCATGATCTGGAGCGCTATCT
GAATACCCTGGGTACGATTGCTGCCATGGCACCCTTGATGGGACTGCTAGGCACGGTGTTTGGCATGATCGAGATCTTCA
GCTCTTTCATGGAAAGCGGTCTGGCCAACGCTCCGGTTCTGGCTGGCGGTATTTCCAAGGCCTTGCTGACCACGGCGGCT
GGTCTGATCGTGGCTATTCCTGCCGTATTCTTCCATCGCTTCCTGCTGCGTCGTGTCGATGAACTGATTGTCTCCATGGA
ACAAGAGTCCATCAAGCTGGTTGAAGTCGTTCAGGGTGATCGTGAAGTAGACTTCGTCACGGAAGGTACCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

76.098

96.698

0.736