Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | IUD19_RS09920 | Genome accession | NZ_CP064326 |
| Coordinates | 2234218..2234664 (+) | Length | 148 a.a. |
| NCBI ID | WP_169710200.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. multiplex strain Riv5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2229218..2239664
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD19_RS09900 (IUD19_09900) | - | 2229466..2230803 (+) | 1338 | WP_027700147.1 | HAMP domain-containing sensor histidine kinase | - |
| IUD19_RS09905 (IUD19_09905) | coaE | 2231070..2231693 (-) | 624 | WP_004084593.1 | dephospho-CoA kinase | - |
| IUD19_RS09910 (IUD19_09910) | pilD | 2231705..2232568 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| IUD19_RS09915 (IUD19_09915) | pilC | 2232575..2233777 (-) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| IUD19_RS09920 (IUD19_09920) | pilA | 2234218..2234664 (+) | 447 | WP_169710200.1 | pilin | Machinery gene |
| IUD19_RS09925 (IUD19_09925) | - | 2234909..2235136 (-) | 228 | WP_012338102.1 | hypothetical protein | - |
| IUD19_RS09930 (IUD19_09930) | pilA/pilAI | 2235981..2236421 (+) | 441 | WP_012338104.1 | pilin | Machinery gene |
| IUD19_RS09935 (IUD19_09935) | pilB | 2237261..2238994 (+) | 1734 | WP_012338105.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15430.64 Da Isoelectric Point: 8.4988
>NTDB_id=442636 IUD19_RS09920 WP_169710200.1 2234218..2234664(+) (pilA) [Xylella fastidiosa subsp. multiplex strain Riv5]
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKSTSNASDIGLRTDTTRCGI
TVKIDAAGTANITCKVKGNSQVNDKTIVWDRTPDNSAGTNGVNNGGVWTCSSNVTSDALRPSGCMAAK
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKSTSNASDIGLRTDTTRCGI
TVKIDAAGTANITCKVKGNSQVNDKTIVWDRTPDNSAGTNGVNNGGVWTCSSNVTSDALRPSGCMAAK
Nucleotide
Download Length: 447 bp
>NTDB_id=442636 IUD19_RS09920 WP_169710200.1 2234218..2234664(+) (pilA) [Xylella fastidiosa subsp. multiplex strain Riv5]
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACATCCAACGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAATCGATGCCGCTGGCACTGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAATGATAAAACCAT
CGTTTGGGATCGTACCCCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTGTGTGGACCTGCTCCTCCAACG
TCACCTCCGATGCACTGAGACCTTCCGGCTGCATGGCTGCTAAATAA
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACATCCAACGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAATCGATGCCGCTGGCACTGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAATGATAAAACCAT
CGTTTGGGATCGTACCCCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTGTGTGGACCTGCTCCTCCAACG
TCACCTCCGATGCACTGAGACCTTCCGGCTGCATGGCTGCTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Pseudomonas aeruginosa PAK |
38.994 |
100 |
0.419 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.177 |
99.324 |
0.419 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.177 |
99.324 |
0.419 |
| pilA | Acinetobacter baumannii strain A118 |
40 |
100 |
0.405 |
| pilA | Vibrio cholerae strain A1552 |
37.662 |
100 |
0.392 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.662 |
100 |
0.392 |
| pilA | Vibrio cholerae C6706 |
37.662 |
100 |
0.392 |