Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HKW97_RS10320 Genome accession   NZ_CP053063
Coordinates   2238026..2238505 (+) Length   159 a.a.
NCBI ID   WP_407361858.1    Uniprot ID   -
Organism   Pseudomonas luteola strain JZ42     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2233026..2243505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW97_RS10305 (HKW97_10235) - 2233325..2233759 (-) 435 WP_286786719.1 type IV pilin protein -
  HKW97_RS10310 (HKW97_10240) - 2234366..2235556 (+) 1191 WP_407361857.1 MFS transporter -
  HKW97_RS10315 (HKW97_10245) - 2235578..2236789 (+) 1212 WP_404628071.1 MFS transporter -
  HKW97_RS10320 (HKW97_10250) ssb 2238026..2238505 (+) 480 WP_407361858.1 single-stranded DNA-binding protein Machinery gene
  HKW97_RS10325 (HKW97_10255) - 2239095..2239319 (+) 225 WP_074826650.1 hypothetical protein -
  HKW97_RS10330 (HKW97_10260) - 2239381..2239725 (-) 345 WP_019365581.1 hypothetical protein -
  HKW97_RS10335 (HKW97_10265) - 2239868..2240062 (-) 195 WP_037030278.1 hypothetical protein -
  HKW97_RS10345 (HKW97_10275) - 2241403..2242158 (+) 756 WP_407361860.1 tripartite tricarboxylate transporter substrate-binding protein -
  HKW97_RS10350 (HKW97_10280) - 2242149..2242331 (+) 183 WP_407361861.1 hypothetical protein -
  HKW97_RS10355 (HKW97_10285) - 2242641..2242790 (-) 150 WP_167517231.1 hypothetical protein -
  HKW97_RS10360 (HKW97_10290) - 2242964..2243242 (-) 279 WP_404628069.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17753.59 Da        Isoelectric Point: 5.2615

>NTDB_id=442638 HKW97_RS10320 WP_407361858.1 2238026..2238505(+) (ssb) [Pseudomonas luteola strain JZ42]
MARGINKVILIGNVGADPEIRYTPNGNPITNITLATSESWKDKQSGQLQERTEWHRVVFFGRLAEIAAEYLRKGSQVYVE
GTLRTRKWQGQDGQDRYTTEVIVDISGTMQLLGGRGDNEPSSNQQSGKQPSGQARRPTQPQPSTQPTPDYDSFDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=442638 HKW97_RS10320 WP_407361858.1 2238026..2238505(+) (ssb) [Pseudomonas luteola strain JZ42]
ATGGCTAGAGGTATCAACAAGGTTATTCTCATTGGTAATGTAGGTGCCGATCCCGAAATCCGCTATACGCCCAATGGTAA
CCCCATCACCAATATCACCCTTGCAACCAGTGAAAGTTGGAAGGACAAGCAGAGTGGTCAGTTGCAAGAGCGAACCGAGT
GGCATCGGGTCGTTTTTTTTGGCCGGCTGGCCGAGATCGCCGCCGAATACCTTCGCAAAGGGTCACAGGTTTACGTAGAG
GGTACATTACGCACACGAAAGTGGCAGGGCCAAGACGGGCAAGACCGCTACACGACTGAAGTTATCGTCGATATAAGCGG
TACCATGCAACTGCTTGGCGGCCGAGGGGATAACGAACCATCGAGTAACCAACAATCCGGCAAACAACCCTCTGGGCAAG
CCCGTAGGCCTACACAGCCGCAGCCCTCAACCCAGCCGACTCCAGACTACGACAGCTTCGATGATGATATTCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.714

100

0.591
  ssb Glaesserella parasuis strain SC1401

47.027

100

0.547
  ssb Neisseria meningitidis MC58

42.045

100

0.465
  ssb Neisseria gonorrhoeae MS11

42.045

100

0.465