Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | GUY17_RS21310 | Genome accession | NZ_CP048031 |
| Coordinates | 4559732..4560166 (+) | Length | 144 a.a. |
| NCBI ID | WP_302476619.1 | Uniprot ID | - |
| Organism | Shewanella sp. Arc9-LZ | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4554732..4565166
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUY17_RS19550 (GUY17_19580) | ampE | 4555798..4556649 (-) | 852 | WP_162024076.1 | beta-lactamase regulator AmpE | - |
| GUY17_RS19555 (GUY17_19585) | ampD | 4556812..4557366 (-) | 555 | WP_162024077.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GUY17_RS19560 (GUY17_19590) | nadC | 4557784..4558662 (+) | 879 | WP_162024078.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GUY17_RS21310 (GUY17_19595) | pilA/pilAI | 4559732..4560166 (+) | 435 | WP_302476619.1 | pilin | Machinery gene |
| GUY17_RS19570 (GUY17_19600) | - | 4560637..4562004 (-) | 1368 | WP_162024079.1 | O-antigen ligase | - |
| GUY17_RS19575 (GUY17_19605) | pilB | 4562202..4563908 (+) | 1707 | WP_162024080.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 15021.25 Da Isoelectric Point: 8.4591
>NTDB_id=419637 GUY17_RS21310 WP_302476619.1 4559732..4560166(+) (pilA/pilAI) [Shewanella sp. Arc9-LZ]
MKGINQIKNAKGFTLIELMIVVAIIGILAAIALPAYQDYTVKSQVGSAYSEVSSVKSQYEVIMNEGKTPSLTATDAGYIG
QTEGDARYCTLALEADGGGVKCTIKNSNAKATGKSLTLKRTAEGVWSCVTGGSLEAKFKPGSCS
MKGINQIKNAKGFTLIELMIVVAIIGILAAIALPAYQDYTVKSQVGSAYSEVSSVKSQYEVIMNEGKTPSLTATDAGYIG
QTEGDARYCTLALEADGGGVKCTIKNSNAKATGKSLTLKRTAEGVWSCVTGGSLEAKFKPGSCS
Nucleotide
Download Length: 435 bp
>NTDB_id=419637 GUY17_RS21310 WP_302476619.1 4559732..4560166(+) (pilA/pilAI) [Shewanella sp. Arc9-LZ]
ATGAAAGGTATTAACCAAATCAAAAACGCTAAGGGTTTCACTCTTATTGAATTAATGATCGTAGTCGCGATCATCGGTAT
TCTTGCAGCAATCGCATTGCCTGCTTATCAAGATTACACTGTTAAATCACAGGTTGGTTCTGCATATTCAGAGGTTAGTT
CAGTTAAATCTCAATATGAAGTAATTATGAATGAAGGAAAAACACCTTCTCTAACTGCTACCGATGCTGGCTATATTGGC
CAGACTGAAGGTGATGCTCGTTACTGCACACTAGCTTTAGAGGCAGATGGTGGTGGCGTTAAATGTACAATCAAGAATTC
AAATGCAAAAGCAACCGGAAAAAGCTTAACCTTAAAGAGGACTGCTGAAGGTGTGTGGTCATGTGTTACGGGTGGGAGTT
TAGAAGCTAAATTCAAACCAGGTAGCTGTAGCTAA
ATGAAAGGTATTAACCAAATCAAAAACGCTAAGGGTTTCACTCTTATTGAATTAATGATCGTAGTCGCGATCATCGGTAT
TCTTGCAGCAATCGCATTGCCTGCTTATCAAGATTACACTGTTAAATCACAGGTTGGTTCTGCATATTCAGAGGTTAGTT
CAGTTAAATCTCAATATGAAGTAATTATGAATGAAGGAAAAACACCTTCTCTAACTGCTACCGATGCTGGCTATATTGGC
CAGACTGAAGGTGATGCTCGTTACTGCACACTAGCTTTAGAGGCAGATGGTGGTGGCGTTAAATGTACAATCAAGAATTC
AAATGCAAAAGCAACCGGAAAAAGCTTAACCTTAAAGAGGACTGCTGAAGGTGTGTGGTCATGTGTTACGGGTGGGAGTT
TAGAAGCTAAATTCAAACCAGGTAGCTGTAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
60.294 |
94.444 |
0.569 |
| pilA | Acinetobacter baumannii strain A118 |
48.905 |
95.139 |
0.465 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
48.148 |
93.75 |
0.451 |
| comP | Acinetobacter baylyi ADP1 |
40.69 |
100 |
0.41 |
| pilA | Pseudomonas aeruginosa PAK |
36.875 |
100 |
0.41 |
| pilA | Vibrio cholerae C6706 |
40 |
100 |
0.403 |
| pilA | Vibrio cholerae strain A1552 |
40 |
100 |
0.403 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40 |
100 |
0.403 |
| pilA2 | Legionella pneumophila str. Paris |
41.606 |
95.139 |
0.396 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.606 |
95.139 |
0.396 |
| pilE | Neisseria gonorrhoeae MS11 |
44.8 |
86.806 |
0.389 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.162 |
100 |
0.382 |