Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   IBC04_RS00825 Genome accession   NZ_CP061020
Coordinates   144912..145409 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain 24740     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 139912..150409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC04_RS00800 (IBC04_00805) - 141327..141649 (-) 323 Protein_118 transposase -
  IBC04_RS00805 (IBC04_00810) - 141838..142164 (+) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  IBC04_RS00810 (IBC04_00815) - 142246..143436 (+) 1191 WP_011680651.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  IBC04_RS00815 (IBC04_00820) - 143694..144158 (-) 465 Protein_121 transposase family protein -
  IBC04_RS00820 (IBC04_00825) - 144516..144605 (+) 90 Protein_122 IS200/IS605 family transposase -
  IBC04_RS00825 (IBC04_00830) comX 144912..145409 (+) 498 WP_002949220.1 sigma factor Regulator
  IBC04_RS00830 (IBC04_00835) - 145509..146351 (-) 843 WP_011225338.1 mechanosensitive ion channel family protein -
  IBC04_RS00835 (IBC04_00840) tig 146492..147775 (+) 1284 WP_011680653.1 trigger factor -
  IBC04_RS00840 (IBC04_00845) rpoE 147933..148508 (+) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  IBC04_RS00845 (IBC04_00850) - 148759..150363 (+) 1605 WP_002949230.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=419031 IBC04_RS00825 WP_002949220.1 144912..145409(+) (comX) [Streptococcus thermophilus strain 24740]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=419031 IBC04_RS00825 WP_002949220.1 144912..145409(+) (comX) [Streptococcus thermophilus strain 24740]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.