Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   IBC08_RS00925 Genome accession   NZ_CP061019
Coordinates   159201..159698 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain 24853     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 154201..164698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS00890 (IBC08_00885) - 154201..155105 (-) 905 Protein_124 ISL3 family transposase -
  IBC08_RS00895 (IBC08_00890) - 155308..155529 (+) 222 WP_002948904.1 DUF4649 family protein -
  IBC08_RS00900 (IBC08_00895) - 155614..155936 (-) 323 Protein_126 transposase -
  IBC08_RS00905 (IBC08_00900) - 156125..156451 (+) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  IBC08_RS00910 (IBC08_00905) - 156533..157723 (+) 1191 WP_011680651.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  IBC08_RS00915 (IBC08_00910) - 157983..158447 (-) 465 Protein_129 transposase family protein -
  IBC08_RS00920 (IBC08_00915) - 158805..158894 (+) 90 Protein_130 IS200/IS605 family transposase -
  IBC08_RS00925 (IBC08_00920) comX 159201..159698 (+) 498 WP_002949220.1 sigma factor Regulator
  IBC08_RS00930 (IBC08_00925) - 159798..160640 (-) 843 WP_207560153.1 mechanosensitive ion channel family protein -
  IBC08_RS00935 (IBC08_00930) tig 160781..162064 (+) 1284 WP_207563295.1 trigger factor -
  IBC08_RS00940 (IBC08_00935) rpoE 162222..162797 (+) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  IBC08_RS00945 (IBC08_00940) - 163048..164652 (+) 1605 WP_002949230.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=418929 IBC08_RS00925 WP_002949220.1 159201..159698(+) (comX) [Streptococcus thermophilus strain 24853]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=418929 IBC08_RS00925 WP_002949220.1 159201..159698(+) (comX) [Streptococcus thermophilus strain 24853]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCGTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGTTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.