Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPY13_RS17940 Genome accession   NZ_CP046824
Coordinates   879982..882042 (-) Length   686 a.a.
NCBI ID   WP_080551345.1    Uniprot ID   -
Organism   Vibrio mimicus strain 06-2455     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 874982..887042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS17925 clcA 876064..877470 (+) 1407 WP_005514301.1 H(+)/Cl(-) exchange transporter ClcA -
  GPY13_RS17930 - 877572..878533 (+) 962 Protein_771 TDT family transporter -
  GPY13_RS17935 cqsA 878730..879899 (+) 1170 WP_001082287.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY13_RS17940 cqsS 879982..882042 (-) 2061 WP_080551345.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY13_RS17945 - 882144..885185 (-) 3042 WP_001247633.1 AAA family ATPase -
  GPY13_RS17950 - 885187..886326 (-) 1140 WP_000670235.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78582.66 Da        Isoelectric Point: 5.4132

>NTDB_id=408478 GPY13_RS17940 WP_080551345.1 879982..882042(-) (cqsS) [Vibrio mimicus strain 06-2455]
MTVSMEVIKKVYQYAEPNFSLVGWMGMLGYPAYYFIWEYWFPQTYENLGLRFVAALLFAGLAFRESLPNKWKRYMPYYFL
LTIGFCLPFFFCFMMLMNNWSTIWAMSFMASIFLHILLVHDTKVMALQAITSILMAYVAVYGFTDFQPNTLIEWPYVPVF
LFTYVFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVIRTMLPKPQAAAQSTYPLDAQELDLLHQILN
EADDVIYSGNNTIDLLLTSIDENRVSTASFKKYAAAEVIEKALKSFPYKNAADQHAIQLDVRQPFDFFGSDTLLTYALFN
LLKNAFYYQKEQFSVCIQIEQSAEHNLIKVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCFS
KHGEWTEFVLTFPRYESKIVREIKTDLLKSKSVIYIGSNQSIVRELNQLAAEEEFGFTALSAQQAVRRQDYEFEFDLILL
DLDDATQQGELLPKLEGTLSFAEGCIGYIYDPSKEYAVNINRYLHIQPISIHSVLKKTSKVIDRLLFEQDSLVMNRNIIP
LQKSRHERRILVVDDNQSIRTFTSILLEQQGYEVVQANDGCEVIAYMDTQTIDLVLMDIEMPKISGLEATHLIRSSDRDY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=408478 GPY13_RS17940 WP_080551345.1 879982..882042(-) (cqsS) [Vibrio mimicus strain 06-2455]
GTGACGGTGAGCATGGAAGTGATAAAAAAAGTTTACCAGTACGCGGAACCCAATTTTTCATTGGTGGGGTGGATGGGGAT
GCTCGGCTATCCTGCCTATTACTTCATTTGGGAATACTGGTTTCCGCAAACCTATGAAAATTTAGGTTTGCGTTTTGTTG
CTGCTTTATTGTTCGCTGGGCTTGCGTTTCGGGAGTCATTGCCGAATAAGTGGAAGCGGTACATGCCGTACTACTTTTTG
CTCACAATAGGTTTTTGCTTACCTTTTTTCTTTTGTTTCATGATGTTGATGAACAACTGGTCGACCATTTGGGCGATGTC
GTTCATGGCATCCATCTTTTTACACATCCTCTTAGTGCACGATACTAAGGTGATGGCGCTGCAAGCCATTACCTCGATTT
TGATGGCTTATGTGGCGGTGTATGGCTTCACGGATTTCCAACCGAATACCTTAATTGAATGGCCGTATGTGCCTGTTTTC
TTGTTCACTTATGTCTTCGGCAATTTGTGTTTCTTCCGTAACCAAATTTCCCATGAAACCAAAGTCTCCATTGCTAAAAC
ATTTGGTGCGGGGATCGCACATGAAATGCGTAACCCACTGAGTGCCTTGAAAACATCAATAGACGTCATTCGTACCATGC
TTCCTAAGCCTCAGGCAGCCGCGCAATCGACTTATCCATTGGATGCACAAGAACTAGACCTTCTACACCAGATTTTGAAT
GAGGCGGATGATGTTATCTATTCAGGCAATAACACCATTGATTTGTTGTTGACCTCAATCGATGAAAACCGTGTTTCCAC
CGCAAGCTTTAAAAAATACGCTGCGGCTGAAGTAATTGAGAAAGCACTCAAGAGCTTTCCTTATAAAAATGCCGCTGATC
AACACGCGATTCAGTTGGATGTTCGTCAGCCATTTGATTTTTTTGGTAGTGATACCTTGTTGACTTATGCCTTGTTCAAC
TTACTGAAGAATGCCTTTTACTATCAGAAAGAACAATTTTCCGTTTGTATTCAAATTGAGCAGAGTGCTGAACACAACCT
AATTAAAGTGCGTGATAACGGGGTAGGTATTGCTCCTGAAATGTTGGAAGACATCTTTCGTGACTTTTATACCTTTGGCA
AAAATGGCAGTTACGGCCTAGGATTGCCGTTTTGTCGTAAAGTGATGACTGCATTTGGCGGCACCATTCGCTGTTTTTCT
AAGCATGGTGAGTGGACGGAGTTCGTGCTGACGTTCCCACGTTACGAGTCAAAAATCGTTAGAGAAATTAAAACCGATTT
ATTAAAGTCCAAATCAGTTATTTACATAGGCTCGAATCAGTCGATTGTTCGAGAACTGAATCAGTTAGCGGCAGAGGAAG
AGTTTGGCTTTACTGCACTTTCAGCTCAGCAAGCGGTAAGACGGCAAGACTATGAATTTGAATTCGACCTAATCTTACTG
GACCTAGATGATGCCACTCAGCAAGGCGAACTTTTACCCAAACTCGAAGGAACGTTGAGTTTCGCGGAAGGCTGTATCGG
GTATATCTATGACCCTAGCAAAGAGTATGCGGTGAACATCAACCGTTACCTGCATATTCAACCGATCAGCATCCATTCCG
TGCTGAAGAAAACCAGCAAAGTCATTGATCGTCTGCTCTTTGAGCAAGACTCTCTGGTGATGAATCGCAACATCATTCCG
CTGCAAAAAAGTCGCCATGAACGGCGAATTCTTGTCGTTGATGACAACCAATCTATCCGTACTTTCACATCGATTTTGCT
TGAACAGCAAGGATATGAGGTTGTGCAAGCGAATGATGGGTGCGAGGTGATCGCTTATATGGATACTCAGACTATCGACT
TAGTGTTGATGGACATTGAGATGCCTAAAATCAGTGGCTTAGAAGCGACACATCTCATCCGAAGCTCTGATCGTGATTAT
AAAAACATTCCTATCATTGGATATACAGGTGATAACAGCCCGAAAACCTTAGCGTTGGTGCAAACATCCGGCATGAATGA
TTTCATTGTTAAGCCTGCTGACCGTGATGTATTACTGAATAAAGTAGCGGCTTGGGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(570-682)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

84.84

100

0.848

Multiple sequence alignment