Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY13_RS21510 Genome accession   NZ_CP046823
Coordinates   2967134..2967994 (+) Length   286 a.a.
NCBI ID   WP_005511998.1    Uniprot ID   A0A2J9V3T1
Organism   Vibrio mimicus strain 06-2455     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2962134..2972994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS13635 greB 2962459..2962940 (-) 482 Protein_2611 transcription elongation factor GreB -
  GPY13_RS13640 - 2963310..2965631 (+) 2322 WP_000030098.1 Tex family protein -
  GPY13_RS13645 - 2965723..2966193 (-) 471 WP_000961395.1 hypothetical protein -
  GPY13_RS13650 bioH 2966437..2967198 (-) 762 WP_001240429.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY13_RS21510 comF 2967134..2967994 (+) 861 WP_005511998.1 ComF family protein Machinery gene
  GPY13_RS13660 nfuA 2968083..2968670 (+) 588 WP_000070175.1 Fe-S biogenesis protein NfuA -
  GPY13_RS13665 nudE 2968798..2969346 (+) 549 WP_000095822.1 ADP compounds hydrolase NudE -
  GPY13_RS13670 cysQ 2969369..2970196 (+) 828 WP_000106706.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY13_RS13675 - 2970237..2970995 (-) 759 WP_000816513.1 type II secretion system protein N -
  GPY13_RS13680 - 2970997..2971494 (-) 498 WP_000661338.1 type II secretion system protein M -
  GPY13_RS13685 gspL 2971504..2972715 (-) 1212 WP_001288760.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32649.77 Da        Isoelectric Point: 8.7344

>NTDB_id=408472 GPY13_RS21510 WP_005511998.1 2967134..2967994(+) (comF) [Vibrio mimicus strain 06-2455]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIRSANRQDEMSYPDSWLAMLTNWLRKTTAPLLIPECHLCRLALDKNLP
FGICTACQAWLEHGYRCARCGLPTLTAVEQCGQCLRQPPPWRKLICVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
ISEPAPLLCSVPLHWRRRWQRGFNQSDLLARELARSLHTQYDSQLFARRRATPHQQGLSKAQRVQNLRDAFVLNNQPNQQ
HIAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSKG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=408472 GPY13_RS21510 WP_005511998.1 2967134..2967994(+) (comF) [Vibrio mimicus strain 06-2455]
ATGCCCCAGCCGTGTACCAATACTAGATCTTGTCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
CTCTATTTCCATCTTCATCAGGTCTGCCAATCGGCAAGATGAGATGAGTTACCCTGATTCTTGGCTCGCTATGTTAACCA
ATTGGCTCAGAAAAACCACCGCACCACTGCTCATTCCTGAATGCCATCTTTGTCGACTCGCGCTCGATAAAAACTTGCCG
TTTGGGATCTGCACCGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGTGCTCGCTGCGGTTTACCCACGCTCACGGC
TGTCGAGCAGTGCGGGCAGTGTCTGCGTCAGCCTCCGCCGTGGCGAAAACTGATTTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCACCACGTTTAGCTAAGTTACTCGCCACCCAG
ATTAGCGAGCCAGCCCCTTTACTGTGCAGTGTGCCACTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGCGAGTTAGCACGCTCATTACATACACAGTATGACAGCCAACTCTTTGCGCGCCGCCGAGCCACACCGC
ATCAACAAGGGCTCAGCAAAGCGCAGCGAGTGCAAAATTTGCGTGATGCATTTGTGCTAAATAATCAGCCAAACCAGCAA
CATATTGCGATTGTGGATGATGTTGTGACCACAGGCAGTACCATCCGACATTTATGCGATTTACTGCTTGATGTCGGCGT
ACAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCAAAGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(190-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J9V3T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

90.21

100

0.902
  comF Vibrio campbellii strain DS40M4

45.378

83.217

0.378

Multiple sequence alignment