Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY13_RS17935 Genome accession   NZ_CP046824
Coordinates   878730..879899 (+) Length   389 a.a.
NCBI ID   WP_001082287.1    Uniprot ID   -
Organism   Vibrio mimicus strain 06-2455     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 873730..884899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS17920 - 874595..875583 (-) 989 Protein_769 CobW family GTP-binding protein -
  GPY13_RS17925 clcA 876064..877470 (+) 1407 WP_005514301.1 H(+)/Cl(-) exchange transporter ClcA -
  GPY13_RS17930 - 877572..878533 (+) 962 Protein_771 TDT family transporter -
  GPY13_RS17935 cqsA 878730..879899 (+) 1170 WP_001082287.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY13_RS17940 cqsS 879982..882042 (-) 2061 WP_080551345.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43788.07 Da        Isoelectric Point: 6.6558

>NTDB_id=408477 GPY13_RS17935 WP_001082287.1 878730..879899(+) (cqsA) [Vibrio mimicus strain 06-2455]
MNRTHLPDFIQDKITHYIENYFDINKNGKHLVLGKQARSEDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTVAPLAELVNLSKEFGCALLVDESHSLGTHGPNGAGLLAELNLTHEVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLDIIECADDKRHHLEKMAKKLRIGLTQLGMTIRSESQIIGL
ETGDERNTEKVRDFLENNGLFGSVFCRPATSKNKNIIRLSLNSDVTEKQITRIIEICTDAVKCSDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=408477 GPY13_RS17935 WP_001082287.1 878730..879899(+) (cqsA) [Vibrio mimicus strain 06-2455]
ATGAATAGAACACATCTTCCTGATTTTATTCAGGATAAGATAACTCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGCAAACATCTAGTATTGGGAAAACAAGCTAGAAGTGAAGATATTATTTTGCAAAGTAATGATTATCTCGCACTGGCCA
ATCATCCTTTAATTAAAGCGCGTTTAGCAAAGTCTTTGCTTGAGGAACAGCAGAGCTTATTTATGTCAGCCTCATTCTTA
CAAAATGATTATGACAAACCCATGATAGAGAAGCGCTTGGCCAAGTTCACAGGCTTTGATGAGTGTTTACTGTCTCAATC
CGGTTGGAATGCCAACGTAGGGTTGTTACAAACCATTTGCCAACCTAACACCAATGTCTACATCGACTTTTTCGCTCACA
TGTCATTGTGGGAAGGAGCACGCTATGCGAACGCTCAAGCCCACCCTTTTATGCACAATAACTGTGACCATTTACGTATG
CTCATCCAGCGCCATGGGCCAGGAATCATAGTTGTCGATTCCATTTACAGCACTCTTGGCACTGTTGCGCCACTGGCAGA
GCTAGTCAATCTCAGTAAGGAGTTCGGCTGCGCTTTACTGGTTGATGAATCGCACTCTTTGGGGACGCACGGCCCTAACG
GTGCAGGTTTACTCGCTGAGTTGAACCTCACCCATGAAGTGCATTTCATGACCGCCAGCTTAGCCAAAACCTTTGCTTAT
CGAGCTGGAGCGATTTGGTGTAATAATGAGGTCAACCGTTGCGTGCCATTTATTAGCTATCCGGCGATTTTTAGTTCGAC
CTTACTTCCTTATGAAGCGGCTGGCTTAGAAACCACGTTAGATATTATTGAATGCGCGGATGATAAACGGCATCACTTAG
AAAAAATGGCCAAAAAACTGCGCATAGGGTTAACCCAATTAGGCATGACCATTCGTAGTGAAAGCCAAATTATTGGTTTA
GAAACGGGGGATGAGCGAAATACAGAAAAAGTCCGTGATTTTTTAGAAAACAATGGCTTATTTGGTTCTGTTTTTTGTCG
ACCTGCCACATCAAAAAACAAGAATATTATCCGCTTATCACTCAATAGTGATGTGACGGAAAAGCAAATAACTCGGATAA
TTGAAATATGCACTGATGCAGTAAAATGTTCAGATTTTTATTTTCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(42-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

91.003

100

0.91

Multiple sequence alignment