Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY13_RS16570 Genome accession   NZ_CP046824
Coordinates   570883..571980 (+) Length   365 a.a.
NCBI ID   WP_000827826.1    Uniprot ID   D2Y9K3
Organism   Vibrio mimicus strain 06-2455     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 565883..576980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS16540 - 567064..567315 (-) 252 WP_005520676.1 YgjV family protein -
  GPY13_RS16545 - 567727..568047 (-) 321 WP_001089530.1 DUF496 family protein -
  GPY13_RS16550 - 568236..568433 (+) 198 WP_001246068.1 hypothetical protein -
  GPY13_RS16555 - 568476..569125 (+) 650 Protein_496 YceH family protein -
  GPY13_RS16560 - 569125..569424 (+) 300 WP_000449703.1 GIY-YIG nuclease family protein -
  GPY13_RS16565 traF 569525..570684 (+) 1160 Protein_498 conjugal transfer protein TraF -
  GPY13_RS16570 luxP 570883..571980 (+) 1098 WP_000827826.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY13_RS16575 luxQ 572000..574573 (+) 2574 WP_001026296.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPY13_RS16580 - 574565..575230 (-) 666 WP_000974292.1 flagellar brake protein -
  GPY13_RS16585 - 575389..575907 (-) 519 WP_000932976.1 hypothetical protein -
  GPY13_RS16590 - 576120..576518 (-) 399 WP_000831409.1 YgiW/YdeI family stress tolerance OB fold protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41775.52 Da        Isoelectric Point: 6.4002

>NTDB_id=408474 GPY13_RS16570 WP_000827826.1 570883..571980(+) (luxP) [Vibrio mimicus strain 06-2455]
MKRNILLSLLLTATLFTSATYADSLKGYWHYDEFLTEFPEQQNLTDQLAKTVRDKPIPLSVKQRQPVVISVVYPGQQISD
YWVRNIKAFEKRMDELGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGRQPMMYIGFDHELGALQLAQQYQKIAPKQKPYSVLYFSEGYISEARGDTFIQQMNEEHRFQLASSYYTKAT
EQSGYEATLNIVKNNPEIGFIYACATDIALGAAQALKELGRQDILLNGWGGGSAELDALAKGDLNLTIMRMNDDTGVAMA
EAIKWDLEEKVVPLVYSGDFEIVTQQDSSKHVEALKARAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=408474 GPY13_RS16570 WP_000827826.1 570883..571980(+) (luxP) [Vibrio mimicus strain 06-2455]
ATGAAAAGAAATATACTGCTGTCGCTGCTTCTGACTGCAACGCTCTTCACTTCAGCAACTTATGCTGATTCTTTGAAAGG
GTATTGGCATTATGATGAGTTCCTGACGGAATTCCCCGAGCAGCAGAATCTGACCGATCAGCTAGCAAAAACAGTACGCG
ATAAGCCTATACCACTCAGTGTTAAACAGCGGCAACCCGTCGTGATTTCGGTCGTGTATCCTGGACAACAGATCTCCGAT
TATTGGGTTCGTAATATCAAGGCTTTCGAGAAACGGATGGATGAACTCGGTATCCGTTATCAAATTAATCAAGTTTTTAC
TCGTCCTAATCTCGATACTCGCCAGCAAAGTGTCTCCTTGATGGAAGCACTCAAAAACAAGAGCGATTATCTGATTTTCA
CTTTAGATACCACGCGTCACCGTAAGTTTATTGAGCATGTGTTGCACTCTTCTGAAACCAAGCTGATTTTGCAAAACATC
ACGACCCCCGTAAAAGATTGGCAAGGCCGTCAACCTATGATGTACATCGGCTTTGATCACGAGCTAGGGGCATTGCAGCT
CGCACAGCAGTACCAAAAAATTGCCCCTAAACAAAAACCATACTCCGTTCTCTATTTCTCTGAAGGTTACATCAGTGAAG
CACGGGGTGATACTTTCATTCAGCAGATGAATGAAGAACACCGTTTTCAATTGGCTTCTTCGTATTACACTAAAGCGACC
GAACAAAGTGGTTACGAGGCGACATTGAACATAGTCAAAAATAATCCAGAGATTGGTTTCATTTATGCTTGTGCAACGGA
TATTGCTTTGGGAGCCGCTCAAGCATTAAAAGAGCTTGGCCGACAAGACATTTTACTGAATGGCTGGGGTGGCGGTTCAG
CCGAATTGGATGCTTTGGCCAAAGGCGATCTGAATCTCACTATCATGCGAATGAATGATGATACAGGCGTGGCAATGGCG
GAAGCCATCAAGTGGGATTTGGAAGAGAAAGTCGTACCACTCGTCTATTCTGGTGATTTTGAAATCGTGACCCAACAAGA
TTCATCAAAACATGTTGAAGCACTGAAAGCCCGCGCTTTCCGTTATTCGGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2Y9K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

83.836

100

0.838

Multiple sequence alignment