Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY19_RS03175 | Genome accession | NZ_CP046763 |
| Coordinates | 683080..683529 (+) | Length | 149 a.a. |
| NCBI ID | WP_031778455.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 2012AW-0353 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 678080..688529
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY19_RS03160 | pdhR | 680111..680878 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GPY19_RS03165 | ampD | 681284..681835 (-) | 552 | WP_029855964.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY19_RS03170 | nadC | 681928..682815 (+) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY19_RS03175 | pilA | 683080..683529 (+) | 450 | WP_031778455.1 | pilin | Machinery gene |
| GPY19_RS03180 | pilB | 683533..685218 (+) | 1686 | WP_062905453.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY19_RS03185 | pilC | 685242..686465 (+) | 1224 | WP_158131160.1 | type II secretion system F family protein | Machinery gene |
| GPY19_RS03190 | pilD | 686530..687399 (+) | 870 | WP_031778454.1 | A24 family peptidase | Machinery gene |
| GPY19_RS03195 | coaE | 687400..688014 (+) | 615 | WP_031778453.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15612.79 Da Isoelectric Point: 7.8194
>NTDB_id=407353 GPY19_RS03175 WP_031778455.1 683080..683529(+) (pilA) [Vibrio parahaemolyticus strain 2012AW-0353]
MKHSKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVAKSELGAGLATITSVRTNVEDYIVTNGSFPDGTTAGQLTTD
LGVIQPNNGTITFDDANSNILLTFAGSGNSPDVNNAKIALNRAAGGTWTCKATLDAKLLPKSCSKDANL
MKHSKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVAKSELGAGLATITSVRTNVEDYIVTNGSFPDGTTAGQLTTD
LGVIQPNNGTITFDDANSNILLTFAGSGNSPDVNNAKIALNRAAGGTWTCKATLDAKLLPKSCSKDANL
Nucleotide
Download Length: 450 bp
>NTDB_id=407353 GPY19_RS03175 WP_031778455.1 683080..683529(+) (pilA) [Vibrio parahaemolyticus strain 2012AW-0353]
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCGGTAATTGGTGTTTT
GGCGGCGATTGCTATCCCTCAATACCAAAACTATGTGGCCAAGTCAGAGTTGGGGGCTGGACTAGCAACAATAACCTCAG
TTCGAACTAATGTTGAAGATTACATTGTTACAAATGGTAGTTTTCCTGATGGCACAACTGCTGGCCAGCTAACAACAGAC
TTAGGAGTGATTCAGCCAAACAATGGTACAATAACTTTTGATGACGCCAATAGCAACATCCTGTTAACTTTTGCTGGCTC
TGGAAATAGCCCTGACGTAAATAATGCAAAAATAGCACTAAACAGAGCGGCTGGTGGTACATGGACATGTAAAGCCACCC
TAGATGCTAAACTACTTCCAAAATCATGTTCTAAGGATGCTAATTTGTAG
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCGGTAATTGGTGTTTT
GGCGGCGATTGCTATCCCTCAATACCAAAACTATGTGGCCAAGTCAGAGTTGGGGGCTGGACTAGCAACAATAACCTCAG
TTCGAACTAATGTTGAAGATTACATTGTTACAAATGGTAGTTTTCCTGATGGCACAACTGCTGGCCAGCTAACAACAGAC
TTAGGAGTGATTCAGCCAAACAATGGTACAATAACTTTTGATGACGCCAATAGCAACATCCTGTTAACTTTTGCTGGCTC
TGGAAATAGCCCTGACGTAAATAATGCAAAAATAGCACTAAACAGAGCGGCTGGTGGTACATGGACATGTAAAGCCACCC
TAGATGCTAAACTACTTCCAAAATCATGTTCTAAGGATGCTAATTTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
52.288 |
100 |
0.537 |
| pilA | Vibrio cholerae strain A1552 |
52.288 |
100 |
0.537 |
| pilA | Vibrio cholerae C6706 |
52.288 |
100 |
0.537 |
| pilA | Pseudomonas aeruginosa PAK |
46.309 |
100 |
0.463 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
47.059 |
91.275 |
0.43 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.361 |
96.644 |
0.409 |
| pilA | Haemophilus influenzae Rd KW20 |
35.948 |
100 |
0.369 |
| pilA2 | Legionella pneumophila str. Paris |
39.855 |
92.617 |
0.369 |
| pilA | Acinetobacter baumannii strain A118 |
39.706 |
91.275 |
0.362 |
| pilA/pilA1 | Eikenella corrodens VA1 |
33.333 |
100 |
0.362 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.13 |
92.617 |
0.362 |