Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPY19_RS03185 Genome accession   NZ_CP046763
Coordinates   685242..686465 (+) Length   407 a.a.
NCBI ID   WP_158131160.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0353     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680242..691465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY19_RS03165 ampD 681284..681835 (-) 552 WP_029855964.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GPY19_RS03170 nadC 681928..682815 (+) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPY19_RS03175 pilA 683080..683529 (+) 450 WP_031778455.1 pilin Machinery gene
  GPY19_RS03180 pilB 683533..685218 (+) 1686 WP_062905453.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY19_RS03185 pilC 685242..686465 (+) 1224 WP_158131160.1 type II secretion system F family protein Machinery gene
  GPY19_RS03190 pilD 686530..687399 (+) 870 WP_031778454.1 A24 family peptidase Machinery gene
  GPY19_RS03195 coaE 687400..688014 (+) 615 WP_031778453.1 dephospho-CoA kinase -
  GPY19_RS03200 zapD 688042..688782 (+) 741 WP_062905553.1 cell division protein ZapD -
  GPY19_RS03205 yacG 688851..689045 (+) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  GPY19_RS03210 rplS 689440..689793 (-) 354 WP_005462554.1 50S ribosomal protein L19 -
  GPY19_RS03215 trmD 689835..690578 (-) 744 WP_024699424.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GPY19_RS03220 rimM 690606..691154 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  GPY19_RS03225 rpsP 691183..691431 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45192.33 Da        Isoelectric Point: 10.3849

>NTDB_id=407355 GPY19_RS03185 WP_158131160.1 685242..686465(+) (pilC) [Vibrio parahaemolyticus strain 2012AW-0353]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSQTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=407355 GPY19_RS03185 WP_158131160.1 685242..686465(+) (pilC) [Vibrio parahaemolyticus strain 2012AW-0353]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGTGCTGAACTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCAAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.749

100

0.857
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.191

99.017

0.408
  pilG Neisseria gonorrhoeae MS11

40.247

99.509

0.4
  pilG Neisseria meningitidis 44/76-A

40

99.509

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396
  pilC Legionella pneumophila strain ERS1305867

39.558

100

0.396

Multiple sequence alignment