Detailed information NTG0407356

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY19_RS03190
• Genome accession: NZ_CP046763
• Coordinates: 686530..687399 (+)
• Length: 289 a.a.
• NCBI ID: WP_031778454.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2012AW-0353
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 681530..692399

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY19_RS03170	nadC	681928..682815 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GPY19_RS03175	pilA	683080..683529 (+)	450	WP_031778455.1	pilin	Machinery gene
GPY19_RS03180	pilB	683533..685218 (+)	1686	WP_062905453.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY19_RS03185	pilC	685242..686465 (+)	1224	WP_158131160.1	type II secretion system F family protein	Machinery gene
GPY19_RS03190	pilD	686530..687399 (+)	870	WP_031778454.1	A24 family peptidase	Machinery gene
GPY19_RS03195	coaE	687400..688014 (+)	615	WP_031778453.1	dephospho-CoA kinase	-
GPY19_RS03200	zapD	688042..688782 (+)	741	WP_062905553.1	cell division protein ZapD	-
GPY19_RS03205	yacG	688851..689045 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
GPY19_RS03210	rplS	689440..689793 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
GPY19_RS03215	trmD	689835..690578 (-)	744	WP_024699424.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY19_RS03220	rimM	690606..691154 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
GPY19_RS03225	rpsP	691183..691431 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32433.54 Da
• Isoelectric Point: 7.1971

>NTDB_id=407356 GPY19_RS03190 WP_031778454.1 686530..687399(+) (pilD) [Vibrio parahaemolyticus strain 2012AW-0353]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQELLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWISLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=407356 GPY19_RS03190 WP_031778454.1 686530..687399(+) (pilD) [Vibrio parahaemolyticus strain 2012AW-0353]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAACTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGATAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453