Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   GPA00_RS04515 Genome accession   NZ_CP046629
Coordinates   891501..891977 (+) Length   158 a.a.
NCBI ID   WP_157327657.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 886501..896977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS04515 (GPA00_04515) comX/sigX 891501..891977 (+) 477 WP_157327657.1 sigma-70 family RNA polymerase sigma factor Regulator
  GPA00_RS04520 (GPA00_04520) - 892176..892442 (+) 267 WP_021141631.1 ACT domain-containing protein -
  GPA00_RS04525 (GPA00_04525) - 892454..893791 (+) 1338 WP_157327659.1 PFL family protein -
  GPA00_RS04530 (GPA00_04530) - 893989..894693 (+) 705 WP_024344743.1 histidine phosphatase family protein -
  GPA00_RS04535 (GPA00_04535) - 894677..895450 (+) 774 WP_157327661.1 M15 family metallopeptidase -
  GPA00_RS04540 (GPA00_04540) - 895447..896037 (+) 591 WP_157327664.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19353.25 Da        Isoelectric Point: 9.4025

>NTDB_id=406300 GPA00_RS04515 WP_157327657.1 891501..891977(+) (comX/sigX) [Streptococcus equinus strain CNU G6]
MDFESYFETVKPIILKLRRYYFVKLWDYDDWIQEGRIVFFKLLQEHPEVLINEGRRYTYFKTKFSNHVKDTIRHQESFKR
KFNRMPYEEIGEISHCVPQLNFFEVADFIAYRDSLSQLKATLSLEEQKKLAKVVRGERFEGKKAFLRQIEPYFSDFKH

Nucleotide


Download         Length: 477 bp        

>NTDB_id=406300 GPA00_RS04515 WP_157327657.1 891501..891977(+) (comX/sigX) [Streptococcus equinus strain CNU G6]
GTGGATTTTGAAAGCTATTTTGAAACTGTAAAACCAATTATTTTAAAATTAAGACGTTATTACTTTGTGAAATTATGGGA
TTATGACGACTGGATTCAGGAAGGGCGTATTGTCTTTTTCAAACTACTGCAAGAACATCCTGAGGTTCTGATTAATGAGG
GAAGACGCTATACTTACTTCAAGACAAAATTTTCTAATCATGTAAAGGATACCATCCGCCATCAGGAATCCTTTAAACGT
AAATTTAATCGTATGCCTTATGAAGAAATAGGTGAAATTAGTCATTGTGTCCCTCAGCTTAATTTTTTTGAAGTGGCAGA
CTTTATTGCTTACCGAGATAGTTTATCTCAATTAAAAGCAACTTTAAGCTTAGAAGAGCAAAAAAAGCTAGCAAAAGTAG
TCAGAGGGGAACGATTTGAAGGGAAGAAAGCCTTCTTACGCCAAATTGAACCTTACTTTTCTGACTTTAAGCACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.