Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   GO995_RS02015 Genome accession   NZ_CP046624
Coordinates   368494..368970 (+) Length   158 a.a.
NCBI ID   WP_157628731.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 363494..373970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS02015 (GO995_02015) comX/sigX 368494..368970 (+) 477 WP_157628731.1 sigma-70 family RNA polymerase sigma factor Regulator
  GO995_RS02020 (GO995_02020) - 369001..370359 (-) 1359 WP_074565173.1 aspartate kinase -
  GO995_RS02025 (GO995_02025) - 370456..371103 (+) 648 WP_157628732.1 HAD family hydrolase -
  GO995_RS02030 (GO995_02030) - 371294..372082 (+) 789 WP_039695989.1 enoyl-CoA hydratase -
  GO995_RS02035 (GO995_02035) - 372198..372632 (+) 435 WP_039695988.1 MarR family winged helix-turn-helix transcriptional regulator -
  GO995_RS02040 (GO995_02040) - 372635..373609 (+) 975 WP_074870059.1 beta-ketoacyl-ACP synthase III -
  GO995_RS02045 (GO995_02045) - 373670..373894 (+) 225 WP_006531079.1 acyl carrier protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19456.34 Da        Isoelectric Point: 9.6123

>NTDB_id=406153 GO995_RS02015 WP_157628731.1 368494..368970(+) (comX/sigX) [Streptococcus ruminicola strain CNU_G3]
MDFERYFQTVKPIILKLRRHYFVKLWDYEDWIQEGRIVFFQLLEEHPDLLINEGKRYSYFKTKFSNHVKDIIRHQESFKR
KFNRMPYEEIGDISHCVPQVSFFEVADYVAYQDSLARLRRTLGREERQKLEKVIRGERFEGKKAFLKSIEPYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=406153 GO995_RS02015 WP_157628731.1 368494..368970(+) (comX/sigX) [Streptococcus ruminicola strain CNU_G3]
GTGGATTTTGAACGTTATTTTCAAACCGTTAAACCAATTATTTTAAAATTACGCCGTCATTATTTTGTCAAACTTTGGGA
TTATGAAGATTGGATTCAAGAAGGTCGAATTGTTTTCTTTCAACTCTTAGAGGAACATCCAGACCTCTTAATTAATGAAG
GCAAACGCTATAGCTACTTTAAAACAAAATTTTCTAACCATGTTAAAGATATTATCCGCCATCAGGAATCCTTTAAGCGG
AAATTTAATCGTATGCCTTATGAAGAAATTGGTGATATTAGTCACTGTGTGCCCCAGGTATCTTTCTTTGAAGTCGCAGA
TTACGTGGCTTATCAGGATAGCTTAGCACGTTTACGAAGAACATTGGGAAGAGAAGAGCGACAGAAGTTGGAAAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGCCTTTTTAAAAAGCATTGAACCGTATTTCTCAGATTTTAGACCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.