Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   GO995_RS01710 Genome accession   NZ_CP046624
Coordinates   306021..306497 (+) Length   158 a.a.
NCBI ID   WP_157628711.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 301021..311497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS01710 (GO995_01710) comX/sigX 306021..306497 (+) 477 WP_157628711.1 sigma-70 family RNA polymerase sigma factor Regulator
  GO995_RS01715 (GO995_01715) - 306691..306957 (+) 267 WP_039696002.1 ACT domain-containing protein -
  GO995_RS01720 (GO995_01720) - 306969..308306 (+) 1338 WP_157628712.1 PFL family protein -
  GO995_RS01725 (GO995_01725) - 308536..309233 (+) 698 Protein_280 histidine phosphatase family protein -
  GO995_RS01730 (GO995_01730) - 309217..309993 (+) 777 WP_074603805.1 M15 family metallopeptidase -
  GO995_RS01735 (GO995_01735) - 309990..310580 (+) 591 WP_157628713.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19461.36 Da        Isoelectric Point: 9.6123

>NTDB_id=406149 GO995_RS01710 WP_157628711.1 306021..306497(+) (comX/sigX) [Streptococcus ruminicola strain CNU_G3]
MDFERYFQTVKPIILKLRRHYFVKLWDYEDWIQEGRIVFFQLLEEHPDLLINEGKRYSYFKTKFSNHVKDIIRHQESFKR
KFNRMPYEEIGDISHCVPQVSFFEVADYVAYQDSLARLRRTFGREDRLKLEKVIRGERFEGKKAFLKSIEPYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=406149 GO995_RS01710 WP_157628711.1 306021..306497(+) (comX/sigX) [Streptococcus ruminicola strain CNU_G3]
GTGGATTTTGAACGCTATTTTCAAACGGTTAAACCAATTATTTTAAAATTACGCCGTCATTATTTTGTCAAACTTTGGGA
TTATGAAGATTGGATTCAAGAAGGTCGAATTGTTTTCTTTCAACTCTTAGAGGAGCATCCAGACCTCTTAATTAATGAAG
GCAAACGCTATAGCTACTTTAAAACAAAATTTTCTAACCATGTTAAAGATATTATCCGCCATCAGGAATCCTTTAAGCGG
AAATTTAATCGTATGCCTTATGAAGAAATTGGTGATATTAGTCACTGTGTGCCCCAGGTATCTTTCTTTGAAGTCGCAGA
TTACGTGGCTTATCAGGATAGCTTAGCACGTTTACGAAGAACATTTGGAAGAGAAGACAGACTAAAGTTGGAAAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGCCTTTTTAAAAAGCATTGAACCGTATTTCTCAGATTTTAGACCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.