Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   GKC13_RS08755 Genome accession   NZ_CP046134
Coordinates   1707277..1707774 (-) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   A0A0M4HKA9
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1708528..1712781 1707277..1707774 flank 754


Gene organization within MGE regions


Location: 1707277..1712781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS08755 (GKC13_08875) comX 1707277..1707774 (-) 498 WP_002949220.1 sigma factor Regulator
  GKC13_RS08760 (GKC13_08880) - 1708081..1708170 (-) 90 Protein_1737 IS200/IS605 family transposase -
  GKC13_RS08765 (GKC13_08885) - 1708528..1708992 (+) 465 Protein_1738 transposase family protein -
  GKC13_RS08770 (GKC13_08890) - 1709252..1710442 (-) 1191 WP_011680651.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  GKC13_RS08775 (GKC13_08895) - 1710524..1710850 (-) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  GKC13_RS08780 (GKC13_08900) - 1711039..1711361 (+) 323 Protein_1741 transposase -
  GKC13_RS08785 (GKC13_08905) - 1711446..1711667 (-) 222 WP_002948904.1 DUF4649 family protein -
  GKC13_RS08790 (GKC13_08910) - 1711870..1712774 (+) 905 Protein_1743 ISL3 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=401540 GKC13_RS08755 WP_002949220.1 1707277..1707774(-) (comX) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=401540 GKC13_RS08755 WP_002949220.1 1707277..1707774(-) (comX) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCGTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGTTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4HKA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.