Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | FR838_RS21460 | Genome accession | NZ_CP042364 |
| Coordinates | 1792922..1793191 (-) | Length | 89 a.a. |
| NCBI ID | WP_410353093.1 | Uniprot ID | - |
| Organism | Acinetobacter pittii strain C54 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1787922..1798191
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR838_RS08600 (FR838_08600) | - | 1788313..1789941 (-) | 1629 | WP_002116813.1 | PglL family O-oligosaccharyltransferase | - |
| FR838_RS08605 (FR838_08605) | - | 1790047..1790256 (-) | 210 | Protein_1663 | O-antigen ligase domain-containing protein | - |
| FR838_RS08610 (FR838_08610) | - | 1790291..1791499 (-) | 1209 | WP_000343018.1 | IS256-like element ISAba26 family transposase | - |
| FR838_RS08615 (FR838_08615) | - | 1791574..1792686 (-) | 1113 | Protein_1665 | O-antigen ligase family protein | - |
| FR838_RS21455 | - | 1792744..1792926 (-) | 183 | WP_416346720.1 | pilin | - |
| FR838_RS21460 | comP | 1792922..1793191 (-) | 270 | WP_410353093.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| FR838_RS08625 (FR838_08625) | - | 1793540..1794100 (-) | 561 | WP_002116794.1 | TPM domain-containing protein | - |
| FR838_RS08630 (FR838_08630) | - | 1794094..1795173 (-) | 1080 | WP_002116710.1 | TPM domain-containing protein | - |
| FR838_RS08635 (FR838_08635) | - | 1795198..1795788 (-) | 591 | WP_002117090.1 | LemA family protein | - |
| FR838_RS08640 (FR838_08640) | - | 1795918..1796805 (-) | 888 | WP_002117027.1 | metal-dependent hydrolase | - |
Sequence
Protein
Download Length: 89 a.a. Molecular weight: 9388.82 Da Isoelectric Point: 6.1790
>NTDB_id=377467 FR838_RS21460 WP_410353093.1 1792922..1793191(-) (comP) [Acinetobacter pittii strain C54]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYMVRSKVTEGLNLASSYKTTIAENAGNGAANLAVGVPNFAATENVASI
TPGWDYRKN
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYMVRSKVTEGLNLASSYKTTIAENAGNGAANLAVGVPNFAATENVASI
TPGWDYRKN
Nucleotide
Download Length: 270 bp
>NTDB_id=377467 FR838_RS21460 WP_410353093.1 1792922..1793191(-) (comP) [Acinetobacter pittii strain C54]
ATGAATGCACAAAAAGGTTTTACTTTAATTGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCAATCGCGAT
TCCAGCTTATCAAGATTATATGGTTCGTTCAAAAGTAACAGAAGGTTTGAATTTAGCTTCATCTTATAAGACTACAATTG
CTGAAAATGCTGGAAATGGTGCTGCGAATTTAGCAGTAGGAGTTCCTAACTTTGCTGCAACAGAAAATGTAGCATCGATC
ACGCCAGGATGGGACTACAGGAAAAATTGA
ATGAATGCACAAAAAGGTTTTACTTTAATTGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCAATCGCGAT
TCCAGCTTATCAAGATTATATGGTTCGTTCAAAAGTAACAGAAGGTTTGAATTTAGCTTCATCTTATAAGACTACAATTG
CTGAAAATGCTGGAAATGGTGCTGCGAATTTAGCAGTAGGAGTTCCTAACTTTGCTGCAACAGAAAATGTAGCATCGATC
ACGCCAGGATGGGACTACAGGAAAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
59.794 |
100 |
0.652 |
| pilA2 | Legionella pneumophila str. Paris |
64.286 |
94.382 |
0.607 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
63.095 |
94.382 |
0.596 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
66.667 |
87.64 |
0.584 |
| pilA | Acinetobacter baumannii strain A118 |
69.355 |
69.663 |
0.483 |
| pilA | Acinetobacter nosocomialis M2 |
67.742 |
69.663 |
0.472 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
76.923 |
58.427 |
0.449 |
| pilA | Pseudomonas aeruginosa PAK |
63.333 |
67.416 |
0.427 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
44.048 |
94.382 |
0.416 |
| pilA | Vibrio campbellii strain DS40M4 |
60 |
67.416 |
0.404 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
63.462 |
58.427 |
0.371 |
| pilE | Neisseria gonorrhoeae MS11 |
63.462 |
58.427 |
0.371 |
| pilA/pilA1 | Eikenella corrodens VA1 |
66 |
56.18 |
0.371 |