Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | FOH38_RS24705 | Genome accession | NZ_CP041696 |
| Coordinates | 2612731..2612934 (+) | Length | 67 a.a. |
| NCBI ID | WP_369435866.1 | Uniprot ID | - |
| Organism | Lysinibacillus fusiformis strain 1226 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2607731..2617934
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOH38_RS12940 (FOH38_12940) | - | 2608290..2609123 (+) | 834 | WP_143997239.1 | flagellar hook-basal body protein | - |
| FOH38_RS12945 (FOH38_12945) | - | 2609148..2609987 (+) | 840 | WP_143997240.1 | flagellar hook-basal body protein | - |
| FOH38_RS12950 (FOH38_12950) | - | 2610035..2610319 (+) | 285 | WP_143997241.1 | DNA-directed RNA polymerase subunit beta | - |
| FOH38_RS12955 (FOH38_12955) | fabZ | 2610379..2610822 (+) | 444 | WP_107923649.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| FOH38_RS12960 (FOH38_12960) | - | 2610959..2611342 (+) | 384 | WP_143997242.1 | hypothetical protein | - |
| FOH38_RS12965 (FOH38_12965) | - | 2611544..2611867 (+) | 324 | WP_369435865.1 | hypothetical protein | - |
| FOH38_RS12970 (FOH38_12970) | - | 2611989..2612414 (-) | 426 | WP_143997244.1 | YwpF family protein | - |
| FOH38_RS24705 | ssbB | 2612731..2612934 (+) | 204 | WP_369435866.1 | single-stranded DNA-binding protein | Machinery gene |
| FOH38_RS12980 (FOH38_12980) | - | 2613420..2616194 (-) | 2775 | WP_143997245.1 | DEAD/DEAH box helicase | - |
| FOH38_RS12985 (FOH38_12985) | - | 2616191..2617765 (-) | 1575 | WP_143997246.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 67 a.a. Molecular weight: 7489.66 Da Isoelectric Point: 10.1671
>NTDB_id=373286 FOH38_RS24705 WP_369435866.1 2612731..2612934(+) (ssbB) [Lysinibacillus fusiformis strain 1226]
MNQVGLVGRLTKDPVLRQVSGNRVQTHFSLAISRNYKNSRGEVEADFILCTVWGKLAEHIVKYCGKG
MNQVGLVGRLTKDPVLRQVSGNRVQTHFSLAISRNYKNSRGEVEADFILCTVWGKLAEHIVKYCGKG
Nucleotide
Download Length: 204 bp
>NTDB_id=373286 FOH38_RS24705 WP_369435866.1 2612731..2612934(+) (ssbB) [Lysinibacillus fusiformis strain 1226]
ATGAATCAGGTCGGACTGGTTGGAAGATTAACAAAGGATCCTGTGTTACGACAAGTATCTGGAAATCGTGTGCAAACACA
TTTTTCTCTTGCCATTAGTCGCAATTACAAAAACAGTCGTGGGGAAGTGGAGGCTGACTTTATTCTTTGCACAGTATGGG
GAAAACTGGCAGAGCATATCGTTAAATATTGCGGAAAAGGTTAA
ATGAATCAGGTCGGACTGGTTGGAAGATTAACAAAGGATCCTGTGTTACGACAAGTATCTGGAAATCGTGTGCAAACACA
TTTTTCTCTTGCCATTAGTCGCAATTACAAAAACAGTCGTGGGGAAGTGGAGGCTGACTTTATTCTTTGCACAGTATGGG
GAAAACTGGCAGAGCATATCGTTAAATATTGCGGAAAAGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
53.731 |
100 |
0.537 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
46.269 |
100 |
0.463 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
46.97 |
98.507 |
0.463 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
44.776 |
100 |
0.448 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
44.776 |
100 |
0.448 |
| ssb | Staphylococcus aureus N315 |
40.299 |
100 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.909 |
98.507 |
0.403 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.909 |
98.507 |
0.403 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.909 |
98.507 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
39.394 |
98.507 |
0.388 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
39.394 |
98.507 |
0.388 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
39.394 |
98.507 |
0.388 |
| ssbA | Streptococcus mutans UA159 |
39.394 |
98.507 |
0.388 |
| ssb | Staphylococcus aureus MW2 |
38.806 |
100 |
0.388 |