Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FHE73_RS10735 Genome accession   NZ_CP040782
Coordinates   2052673..2053008 (+) Length   111 a.a.
NCBI ID   WP_089148430.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HM-311     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2047673..2058008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHE73_RS10710 (FHE73_10710) - 2047868..2048695 (-) 828 WP_089148428.1 hypothetical protein -
  FHE73_RS10715 (FHE73_10715) - 2048805..2049452 (+) 648 WP_000165966.1 HD domain-containing protein -
  FHE73_RS10720 (FHE73_10720) - 2049449..2051344 (+) 1896 WP_000783169.1 ABC-F family ATP-binding cassette domain-containing protein -
  FHE73_RS10725 (FHE73_10725) - 2051420..2052151 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  FHE73_RS10730 (FHE73_10730) - 2052257..2052511 (+) 255 WP_089148429.1 DUF4318 domain-containing protein -
  FHE73_RS10735 (FHE73_10735) ssbA 2052673..2053008 (+) 336 WP_089148430.1 single-stranded DNA-binding protein Machinery gene
  FHE73_RS10740 (FHE73_10740) - 2053280..2053609 (-) 330 WP_000566284.1 hypothetical protein -
  FHE73_RS10745 (FHE73_10745) - 2054105..2055232 (+) 1128 WP_000692564.1 conserved virulence factor C family protein -
  FHE73_RS10750 (FHE73_10750) - 2055236..2055619 (+) 384 WP_089148431.1 DUF393 domain-containing protein -
  FHE73_RS10755 (FHE73_10755) - 2055703..2056137 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  FHE73_RS10760 (FHE73_10760) - 2056187..2056963 (+) 777 WP_089148432.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12669.52 Da        Isoelectric Point: 9.7036

>NTDB_id=367130 FHE73_RS10735 WP_089148430.1 2052673..2053008(+) (ssbA) [Bacillus thuringiensis strain HM-311]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVAEYCKKGSLVGITGRIQTS
NYDDGQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=367130 FHE73_RS10735 WP_089148430.1 2052673..2053008(+) (ssbA) [Bacillus thuringiensis strain HM-311]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAGCTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGGACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.045

100

0.45
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssb Neisseria gonorrhoeae MS11

35.965

100

0.369
  ssb Neisseria meningitidis MC58

35.965

100

0.369

Multiple sequence alignment