Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EUC40_RS06190 Genome accession   NZ_CP040336
Coordinates   1185424..1187163 (+) Length   579 a.a.
NCBI ID   WP_071713042.1    Uniprot ID   -
Organism   Bacillus luti strain FJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1180424..1192163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS06170 ispA 1180638..1181528 (+) 891 WP_156574100.1 (2E,6E)-farnesyl diphosphate synthase -
  EUC40_RS06175 dxs 1181830..1183722 (+) 1893 WP_156574103.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EUC40_RS06180 - 1183726..1184565 (+) 840 WP_071713041.1 TlyA family RNA methyltransferase -
  EUC40_RS06185 argR 1184708..1185157 (+) 450 WP_001032581.1 arginine repressor ArgR -
  EUC40_RS06190 recN 1185424..1187163 (+) 1740 WP_071713042.1 DNA repair protein RecN Machinery gene
  EUC40_RS06195 spoIVB 1187282..1188580 (+) 1299 WP_071713043.1 SpoIVB peptidase -
  EUC40_RS06200 spo0A 1188870..1189664 (+) 795 WP_033665531.1 sporulation transcription factor Spo0A Regulator
  EUC40_RS06205 - 1189958..1191490 (+) 1533 WP_156574105.1 glycosyltransferase family 39 protein -
  EUC40_RS06210 - 1191657..1191803 (-) 147 WP_001247671.1 YycC family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65734.87 Da        Isoelectric Point: 4.8538

>NTDB_id=363344 EUC40_RS06190 WP_071713042.1 1185424..1187163(+) (recN) [Bacillus luti strain FJ]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
GIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELIEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILQEATLLSTMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGTPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=363344 EUC40_RS06190 WP_071713042.1 1185424..1187163(+) (recN) [Bacillus luti strain FJ]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGGAAATCGATTATTATTGATGCGATTAGTTTGCTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGCTATTTTATGTTGAAGATGATAAGCATCCATGTATTGCAAAG
GCAGAAGAATTGGATATAGAAATAGAAGATGGCATGATTATTTTGAAGCGAGACATCGCTGCAAACGGAAAGAGTGTATG
TCGTGTAAATGGAAAACTGGTTACACTTAGTATATTAAAAGAAATTGGGAAAACGCTTGTTGATATTCATGGACAGCATG
AAACACAAGATTTAATGAATGAAGAGCGTCACCTATTTATGCTCGATCATTTTGATGGAGAGCGTATTGTTAAACAATTA
GGTATATATCAAAACGTATACGCTGACTACGAGAAATTAAAAAAACAGTTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAATTCCAACATGAAGAAATTCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAATTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCT
GACGGACAAGGATTAGATAATGTAAGAAGCGCAATGGGACAAATGGAGAGTATCACACATTTAGATGAAGTGTATCAGGA
AAATCATGATTCAATTGCAAATAGCTATTATTTATTAGAAGAAGTGGCGTATCAACTTAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTCTAGATGAAATTGAGACACGTTTAAATGAAATTCGTATGTTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACAATTGAAAATAAAGATGTTCATATTGAAAC
GACGAAGAAACAGTTAAAGGAATTAGAAAGTGTTATTCTGCAAGAAGCAACGTTATTAAGTACTATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATCATG
AAGAGAGAAGGAAATGCAGAAGAACCTCTTGTGGAAGGTACACCAGTAAGACTGACGGCGGATGGTTATGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGTGAACCGCTAAAACCACTTTCAAAGGTCGCTTCCGGCGGGGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGTATTTTTTCTAAGCATCAAGGTGTTGCGTCTGTTATTTTTGATGAAGTGGATACAGGTGTGAGT
GGTCGAGTTGCACAGGCTATTGCGGAGAAGATTTATCGTGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAGGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACGGATTTAACGACAGAACAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment